Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l05
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    28   0.57 
SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    24   9.3  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    24   9.3  

>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 229 LDAFAADFATLHSFFASLLMQLGFFS 306
           +D +  DFAT H+ + + L  +GF S
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -2

Query: 172 LRHIPFSXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYE 56
           + HI FS                 RDWLRVV++    YE
Sbjct: 64  IAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYE 102


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 126 FVKYFRYLFEKG 161
           F+KY  YLFE G
Sbjct: 162 FIKYMNYLFENG 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,431
Number of Sequences: 5004
Number of extensions: 19502
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)