Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l03
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   159   3e-40
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    34   0.014
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.52 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   0.91 
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   4.9  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    26   4.9  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   6.4  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   6.4  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   8.5  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        25   8.5  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  159 bits (386), Expect = 3e-40
 Identities = 73/122 (59%), Positives = 100/122 (81%)
 Frame = -3

Query: 445 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 266
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 265 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 86
             KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ 
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119

Query: 85  RR 80
           R+
Sbjct: 120 RK 121


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 20/67 (29%), Positives = 36/67 (53%)
 Frame = -2

Query: 560 KGSKNISRQFDILHARNSNLNKVL*INVVFLRCSEERQNEVQQAGDFLKKEKQEEAFQCS 381
           KG+ N +  F++ +ARN N+NK+    ++     E+   +   +G+ L K+++E     S
Sbjct: 179 KGNVNDANFFEVEYARNENMNKLSSSELISDDLLEDEIMKPLSSGESLPKKEEEVTKSPS 238

Query: 380 FTYKASV 360
           FT   SV
Sbjct: 239 FTLDDSV 245


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 158 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 307
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 193 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKYTEET 23
           I R+KA GAT  +   P K ++  +K   D  A ++     ++  + K+   YT +T
Sbjct: 724 IGRDKAIGATVRIRRGPMKGLLGVIKDTTDANARVELHTGNKMVTIPKENLLYTTKT 780


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 276 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 190
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 490 STLFRLLFRACKMSNCRDMFFEPFHQ 567
           STL+RLLF   KM  C     E F Q
Sbjct: 45  STLWRLLFELQKMIECEPSCVEYFRQ 70


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 26/100 (26%), Positives = 43/100 (43%)
 Frame = -3

Query: 466 VAAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 287
           V+A ++  K +   TSS  ++       P H+ R L SSP S++     +  S    K  
Sbjct: 231 VSATNEANKLSDIQTSSPSQDIPAKHLEPLHLNRSLSSSPSSEDSDLSLSSDSDDDEKKQ 290

Query: 286 EVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGA 167
             +  +       + K  ++ RK       RI +EKA+GA
Sbjct: 291 PSKSEKTSSMSVSI-KPPKIIRKGSKEQ-NRIAKEKASGA 328


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 157 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 35
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 35  VFTLVFAKCSQSALCSAIEDCFAVFIH 115
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 463 AAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFN 317
           A K+D  K    V S R+K    HF+  + + R+   S  S+   ++FN
Sbjct: 262 AIKADLAKLFNLVESQRQKMDSLHFALTNALERLNDISSTSQFPSERFN 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,369
Number of Sequences: 5004
Number of extensions: 53120
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)