Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l03
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   171   4e-43
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   131   3e-31
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   131   3e-31
Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  171 bits (415), Expect = 4e-43
 Identities = 79/141 (56%), Positives = 110/141 (78%)
 Frame = -3

Query: 445 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 266
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 265 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 86
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++KDR+A+++
Sbjct: 61  RHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVE 119

Query: 85  RRAKGRLAALGKDKGKYTEET 23
           R+A GR    G  KGK+T+ET
Sbjct: 120 RKAAGRSRVTGILKGKHTDET 140


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  131 bits (317), Expect = 3e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = -3

Query: 445 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 266
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 265 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 137
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  131 bits (317), Expect = 3e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = -3

Query: 445 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 266
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 265 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 137
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical
           protein B0464.5a protein.
          Length = 1003

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 467 RCSEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPV 342
           RCS+E  N    A D    E Q+++F  +   + S+D +S +
Sbjct: 189 RCSDEDMNSCVSASDEEDVESQDDSFHVNDATEESIDSVSSI 230


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 175 WPFLFESSQCIQQTFYDTPASLC 243
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical
           protein F35C12.3b protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 175 WPFLFESSQCIQQTFYDTPASLC 243
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 175 WPFLFESSQCIQQTFYDTPASLC 243
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265


>Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical
           protein C36E8.4 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -2

Query: 560 KGSKNISRQFDILHARNSNLNKVL*INVVF-LRCSEERQNEVQQAGD-FLKKE 408
           KG  N++ QFDI    +SNL   +  +++  LR  +  Q +  +A D F+++E
Sbjct: 108 KGWTNVAEQFDIHATIHSNLGSAITEDIIQPLRSIQSNQQKTIRAADNFVERE 160


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 175 WPFLFESSQCIQQTFYDTPASLC 243
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical
           protein K01G12.3 protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 557 GSKNISRQFDILHARNSNLNKVL*INVVFLRCSEERQNEVQQAGDFL 417
           G  ++SR    L      +N++L    V ++  EER+ ++ + G+F+
Sbjct: 172 GPVDVSRALTKLRNDQGEINEILADRAVEIKSEEERRKKLHRVGNFI 218


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 10  PWLWQFPRCIYPCLCQVQPVC 72
           PW ++    +YP LC++  +C
Sbjct: 252 PWYYKMSSAMYPALCELAGIC 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,800
Number of Sequences: 27780
Number of extensions: 316963
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)