Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k24
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   0.61 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   0.80 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   1.8  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   2.4  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    24   5.6  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.5  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    23   9.9  

>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 284 GLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILCRR 159
           G+ + VL L         RDY+   N  +V+ K+C SIL R+
Sbjct: 145 GINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSCVSILSRK 186


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 166  HKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINT 270
            HKML + L+ +  E   ++ S+  +L + SH+I T
Sbjct: 973  HKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRT 1007


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 227 DYIKGENSFNVAFKNCESILCRRISFQTVLMTCAVLLLLF 108
           +++  EN+F +A +N   I C  I F   + + ++L+  F
Sbjct: 91  NFLPFENTFEMALRNDFQIFCTSILFTCYIQSFSLLISNF 130


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 163  RHKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINTFIMRPSV 291
            ++ + +Q  K  L  F P++  ++S L H  H     +  PSV
Sbjct: 938  KYYLENQLSKPLLRIFEPILGEKASSLLHGDHTRTISMAAPSV 980


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -3

Query: 248 CCKKELRDYIKGENSFNVAF---KNCESI 171
           CC K ++D++ G N+ ++ +   KN E I
Sbjct: 558 CCLKNVKDFVCGANTISMQWNLQKNMEFI 586


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 260 LCDECCKKELRDYIKGENSFN 198
           +C+ C KK+L D+    + F+
Sbjct: 17  ICESCLKKQLYDFYHKRDEFS 37


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = -3

Query: 173 ILCRRISFQTV 141
           +LCRRISF+T+
Sbjct: 69  VLCRRISFRTL 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,118,245
Number of Sequences: 5004
Number of extensions: 18125
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)