Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k24
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149     27   3.7  
03_02_0643 - 10090720-10091007,10091121-10091228,10091314-100914...    27   3.7  
02_01_0773 - 5760034-5760386,5760889-5760925,5761069-5761225,576...    26   6.5  
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395...    25   8.6  
07_01_0484 - 3643294-3643478,3644282-3644555,3644646-3645018,364...    25   8.6  

>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
          Length = 282

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -3

Query: 281 LIIKVLILCDECCKK--ELRDYIKG-ENSFNVAFKN 183
           LIIK  + C++CCKK  ++ + +K  E   N+ ++N
Sbjct: 9   LIIKANLECEKCCKKIQKVLNKLKDKEKIINIVYEN 44


>03_02_0643 -
           10090720-10091007,10091121-10091228,10091314-10091400,
           10091488-10091568,10091669-10091803,10091919-10092140,
           10092377-10092457,10092565-10092726,10092851-10093041,
           10093190-10093331,10093449-10093547,10093668-10093806,
           10094355-10094392
          Length = 590

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 186 KLRKHFVSAHQFSNGAD 136
           K+RK F S H FS G+D
Sbjct: 69  KIRKQFASKHTFSTGSD 85


>02_01_0773 -
           5760034-5760386,5760889-5760925,5761069-5761225,
           5762584-5762773,5762873-5763154,5763582-5763645
          Length = 360

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 91  ENFSTLNNNNKTAQVISTV*KLMRRHKMLSQFLKATLNEFSP 216
           E FSTL N N+  + I     + RR  +L +  K+ L E +P
Sbjct: 217 ERFSTLQNENQMLRQILKNTTVSRRGPVLLKIPKSGLREAAP 258


>07_03_1723 -
           29038701-29039213,29039341-29039413,29039504-29039594,
           29039684-29039741,29039829-29039905,29040004-29040214,
           29040339-29040386,29042496-29042608,29043270-29043341,
           29044372-29046336,29046434-29046641,29046847-29047165,
           29047813-29047937,29048024-29048157,29049089-29049164,
           29049276-29049428,29049829-29050532,29050636-29050811,
           29050945-29051107,29051199-29051341,29051802-29051914,
           29053113-29053237,29053867-29054016,29054753-29054921,
           29055201-29055418,29055499-29055709
          Length = 2135

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 251 ECCKKELRDYIKGENSFNVAFKNCESILCRRISFQ 147
           +CCK+     +  +N+ N+   + + I C  + FQ
Sbjct: 201 DCCKEGTHIVLSKKNTLNILSSDFKEICCMPLLFQ 235


>07_01_0484 -
           3643294-3643478,3644282-3644555,3644646-3645018,
           3645177-3645233,3646034-3646458
          Length = 437

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 182 CESILCRRISFQTVLMTCAV 123
           CES LC+ IS  TV  T A+
Sbjct: 335 CESYLCKAISVATVASTLAL 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,425,262
Number of Sequences: 37544
Number of extensions: 95997
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)