Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k24
(304 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97144-1|AAC51646.1| 460|Homo sapiens RET ligand 1 protein. 28 4.7
U95847-1|AAB71811.1| 460|Homo sapiens GDNF receptor alpha protein. 28 4.7
BC014962-1|AAH14962.1| 460|Homo sapiens GDNF family receptor al... 28 4.7
BC001962-1|AAH01962.1| 496|Homo sapiens exonuclease 3'-5' domai... 28 4.7
AK001600-1|BAA91781.1| 496|Homo sapiens protein ( Homo sapiens ... 28 4.7
AF058999-1|AAC14431.1| 465|Homo sapiens glial cell line-derived... 28 4.7
AF042080-1|AAB97371.1| 465|Homo sapiens glial cell line-derived... 28 4.7
AF038421-1|AAC39692.1| 465|Homo sapiens GPI-linked anchor prote... 28 4.7
AF038420-1|AAC39693.1| 465|Homo sapiens GPI-linked anchor prote... 28 4.7
>U97144-1|AAC51646.1| 460|Homo sapiens RET ligand 1 protein.
Length = 460
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 245 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 126
C K LR D + ++S+ + F +C I C QT++ C+
Sbjct: 187 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 229
>U95847-1|AAB71811.1| 460|Homo sapiens GDNF receptor alpha protein.
Length = 460
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 245 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 126
C K LR D + ++S+ + F +C I C QT++ C+
Sbjct: 187 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 229
>BC014962-1|AAH14962.1| 460|Homo sapiens GDNF family receptor alpha
1 protein.
Length = 460
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 245 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 126
C K LR D + ++S+ + F +C I C QT++ C+
Sbjct: 187 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 229
>BC001962-1|AAH01962.1| 496|Homo sapiens exonuclease 3'-5'
domain-like 2 protein.
Length = 496
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = -3
Query: 296 IHTDGLIIKVLILCDECCKKELRDY---IKGENSFN-VAFKNCESILCRRISFQTVLMT 132
I DG I+KV + C E K L+DY ++G +A + ++LC +S +++ T
Sbjct: 30 ILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAET 88
>AK001600-1|BAA91781.1| 496|Homo sapiens protein ( Homo sapiens
cDNA FLJ10738 fis, clone NT2RP3001427, weakly similar to
WERNER SYNDROME HELICASE HOMOLOG. ).
Length = 496
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = -3
Query: 296 IHTDGLIIKVLILCDECCKKELRDY---IKGENSFN-VAFKNCESILCRRISFQTVLMT 132
I DG I+KV + C E K L+DY ++G +A + ++LC +S +++ T
Sbjct: 30 ILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAET 88
>AF058999-1|AAC14431.1| 465|Homo sapiens glial cell line-derived
neurotrophic factor receptor alpha protein.
Length = 465
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 245 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 126
C K LR D + ++S+ + F +C I C QT++ C+
Sbjct: 192 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 234
>AF042080-1|AAB97371.1| 465|Homo sapiens glial cell line-derived
neurotrophic factor receptor alpha protein.
Length = 465
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 245 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 126
C K LR D + ++S+ + F +C I C QT++ C+
Sbjct: 192 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 234
>AF038421-1|AAC39692.1| 465|Homo sapiens GPI-linked anchor protein
protein.
Length = 465
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 245 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 126
C K LR D + ++S+ + F +C I C QT++ C+
Sbjct: 192 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 234
>AF038420-1|AAC39693.1| 465|Homo sapiens GPI-linked anchor protein
protein.
Length = 465
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 245 CKKELR---DYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 126
C K LR D + ++S+ + F +C I C QT++ C+
Sbjct: 192 CHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS 234
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,083,547
Number of Sequences: 237096
Number of extensions: 534302
Number of successful extensions: 909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 76,859,062
effective HSP length: 77
effective length of database: 58,602,670
effective search space used: 1347861410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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