Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k24
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical ...    29   0.85 
AF067942-7|AAG45571.2|  200|Caenorhabditis elegans Hypothetical ...    26   4.5  
AF016682-11|AAB66190.2|  270|Caenorhabditis elegans Hypothetical...    26   4.5  
AF077546-2|AAC26313.2|  293|Caenorhabditis elegans Hypothetical ...    26   6.0  

>AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical
           protein C07F11.2 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 209 NSFNVAFKNCESILCRRISFQTVLMTCAVLLLLFNVEKFSM 87
           N   V  + CE  LC  ++ +  + TC +L LLFN   F++
Sbjct: 364 NDLPVLKRACERYLCSELNSKKDIGTCLLLDLLFNSIVFNL 404


>AF067942-7|AAG45571.2|  200|Caenorhabditis elegans Hypothetical
           protein ZK6.3 protein.
          Length = 200

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 257 CDECCKKELRDYIKGENSFNVAFKN 183
           C +  ++ L+ +IKGEN + V F N
Sbjct: 75  CQQLKERYLKKFIKGENLYRVYFYN 99


>AF016682-11|AAB66190.2|  270|Caenorhabditis elegans Hypothetical
           protein T07D3.1 protein.
          Length = 270

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 236 ELRDYIKGENSFNVAFKNCESILCRRIS 153
           +LRD I+G  +F  A   CE +  RR++
Sbjct: 217 KLRDMIEGSTNFESAVLTCEGMNKRRVA 244


>AF077546-2|AAC26313.2|  293|Caenorhabditis elegans Hypothetical
           protein T08E11.7 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 215 GENSFNVAFKNCESILCRRISFQTVLMTCAVLLLL 111
           GEN  ++AFK+ E +L   IS   + M   V LLL
Sbjct: 94  GENFISIAFKDLELLLKNSISTLELFMPEHVPLLL 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,233,141
Number of Sequences: 27780
Number of extensions: 106592
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)