Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k22
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 29 0.24
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 29 0.24
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 0.73
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 27 0.97
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 1.7
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 3.9
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces... 24 5.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 24 5.2
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 24 5.2
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 24 6.8
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 23 9.0
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 23 9.0
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 23 9.0
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 23 9.0
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 23 9.0
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 23 9.0
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 28.7 bits (61), Expect = 0.24
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 281 QKRNMNTSVDAVTKLIRLQ-NDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 105
+K M D T RL+ + + +++ Y NSD DYT+ ++PG F E +
Sbjct: 1124 EKDAMLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDYTVNDRSSPGSPFPIETETI 1183
Query: 104 T 102
+
Sbjct: 1184 S 1184
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.24
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -1
Query: 257 VDAVTKLIRLQNDVLDMMREVDQYL 183
+D + +IRL ND++ +RE++QYL
Sbjct: 254 LDETSSVIRLSNDLVLFLREMNQYL 278
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 0.73
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 260 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIES 150
S+D +L L NDVL V++ LNS PD +++
Sbjct: 391 SMDTTVRLWNLDNDVLHKDNPVEESLNS-PPDQPVDN 426
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 26.6 bits (56), Expect = 0.97
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -1
Query: 305 VQLLQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTP 168
+ +L++SF + +++ SV A + L+++VLD+ + + + D P
Sbjct: 567 ITILRWSFPRDDVHDSVQAQQIALGLRDEVLDLEKAGIKVIQCDEP 612
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 192 VHFAHHVQHVVLQTNELCHRVHGRVHVSFLKTKLQQLY 305
V+ HHVQ + NE+ +V ++ ++ K+Q L+
Sbjct: 934 VYAHHHVQLRIGLDNEISQNNEAKVFLNIIRAKVQNLH 971
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 24.6 bits (51), Expect = 3.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 166 SGVSLFRYWSTSRIMSNTSFCKRMSFVTAST 258
SGVS +S +R +S SF +SF+TA +
Sbjct: 976 SGVSETPAFSHARDVSTASFSDAVSFITADS 1006
>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 108
Score = 24.2 bits (50), Expect = 5.2
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = -1
Query: 326 AELYSGHVQLLQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESL 147
A+ SG QLL+ RN+ + RL++ L+ RE+D+Y + ++
Sbjct: 3 AQTNSGIQQLLEAEKVARNIVEKARQ-HRTQRLKDARLEAKREIDEYASKKEEEFKKSES 61
Query: 146 NAPGKQFDFLDEMLTKKLIESNAMVFDETNKNL-KFIHNSISICXN 12
A G + + K++ ++ A + + KN K + +SI N
Sbjct: 62 QASG-IYSQAEAESKKQVQDTFASIETSSQKNSDKVVDAILSITCN 106
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.2 bits (50), Expect = 5.2
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -1
Query: 197 VDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESNAMVFDETNKNLKFIHN 33
+ ++LN++TP +++ N F D L KK E + NL+ N
Sbjct: 69 LQKHLNTETPSFSVSIENPSKPSAAFNDASLGKKSTEHQIDGIRNGSSNLQMEGN 123
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 24.2 bits (50), Expect = 5.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 161 CNRACRCLDIGPLRASCP 214
CN C++ LRA+CP
Sbjct: 180 CNLCYECIESDELRANCP 197
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 23.8 bits (49), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 152 SLNA-PGKQFDFLDEMLTKKLIESNAMVFDETNKNLK 45
+LNA PG QF +EM K + E +V + K +K
Sbjct: 370 ALNATPGSQFISAEEMNQKYISEQTQLVEEALTKVMK 406
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 23.4 bits (48), Expect = 9.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 242 KLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 105
+L + QND+ + + + N P IESLN P Q+ F D L
Sbjct: 270 QLAKTQNDLGEFLDYIIS--NYKVP---IESLNQPSDQYSFHDAYL 310
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 302 QLLQFSFQKRNMNTSVDAVTKLIRLQNDVL 213
Q +FQ++++ TS+D+ K +QN L
Sbjct: 393 QPFSLTFQRKSLWTSLDSTIKEAGIQNTAL 422
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 23.4 bits (48), Expect = 9.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 215 LDMMREVDQYLNSDTPDYTIESLNAP 138
LD + D+ SDT D SLNAP
Sbjct: 75 LDSTTDEDEIPGSDTVDEEDPSLNAP 100
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 194 DQYLNSDTPDYTIESLN 144
++YL S P YT+E LN
Sbjct: 486 ERYLISSYPQYTMEDLN 502
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 256 TDVFMFLF*KLNCNNCTCPLYNS 324
TDV +F+F ++N +C ++N+
Sbjct: 209 TDVELFMFGQVNSEHCRHKIFNA 231
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 119 KNQTVCPARLRILWCNRACRCLDIGPLRASCPT 217
KN V LR W NR + D+ P RAS T
Sbjct: 444 KNPQVKTETLR--WLNRCLQLTDVCPPRASLET 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,409
Number of Sequences: 5004
Number of extensions: 21336
Number of successful extensions: 96
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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