Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k22
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754...    29   0.67 
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           27   2.7  
03_03_0094 + 14378953-14380728                                         27   2.7  
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954...    27   2.7  
05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931     27   3.6  
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389...    27   3.6  
01_03_0001 + 11500567-11500696,11503312-11503397,11503515-115040...    26   6.2  
10_03_0013 + 7045552-7045686,7045868-7046083                           26   8.3  
04_04_1409 + 33359206-33359643                                         26   8.3  

>12_01_0819 +
           7545656-7546006,7546087-7546162,7547196-7547401,
           7547498-7547584,7547673-7547765,7548172-7548326,
           7548470-7548554,7548632-7548718,7548801-7548920,
           7549707-7549808,7549903-7550070
          Length = 509

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 272 NMNTSVDAVTKLIRLQNDVLD-MMREVDQYLNSDTPDYTIESLNAP 138
           N+    +  T+L+RL+  +L   ++  ++++N D PD+T+    AP
Sbjct: 459 NLEPKKEVATRLVRLEKKLLHGCLQAANEFIN-DLPDHTVSPCPAP 503


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 276 KKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLH 160
           K H H+R +G  + + + RR  H A S   S  R   L+
Sbjct: 23  KGHHHLRSKGLSSPAASRRRGAHSASSSASSSSRRRVLY 61


>03_03_0094 + 14378953-14380728
          Length = 591

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 279 KKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQR 175
           KKK +H    GD A    +R+VG D  S  +S ++
Sbjct: 471 KKKKKHKDWAGDNADEGRKRKVGDDDLSASVSAKK 505


>02_02_0375 +
           9543411-9543872,9547222-9547290,9547382-9547384,
           9548336-9548422,9549027-9549094,9549192-9549333
          Length = 276

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 169 GVSLFRYWSTSRIMSNTSFC 228
           G S+FRYW   RI S T+ C
Sbjct: 240 GRSIFRYWPPGRIGSTTTDC 259


>05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931
          Length = 553

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
 Frame = -1

Query: 302 QLLQFSF-QKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYT--IESLN---- 144
           Q + F F Q R + T + A   +     +  + + ++      D P  T  +E++N    
Sbjct: 345 QAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRKTDEVETINEEYE 404

Query: 143 APGKQFDFLDEMLTKKLIESNAMVFDETNKNLKFIHNSI 27
           +  ++ D +DE+  +  I   +M+ D+    L+F+  S+
Sbjct: 405 SSDEELDLIDELADEITIRDLSMINDDMIIGLRFLQQSV 443


>02_04_0437 -
           22938263-22938273,22938345-22938444,22938727-22938908,
           22938989-22939092,22939792-22939857,22940032-22940105,
           22940241-22940309,22940902-22941028,22941740-22942971,
           22943163-22943486,22943500-22943793
          Length = 860

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 119 KNQTVCPARLRILWCNRACR 178
           +  ++CP+R+R +  +RACR
Sbjct: 789 RTDSICPSRVRAMLASRACR 808


>01_03_0001 +
           11500567-11500696,11503312-11503397,11503515-11504097,
           11504242-11504474
          Length = 343

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -1

Query: 200 EVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESNAMV 72
           +V ++++   P Y   +  A G+  + LD +L +KL+ ++++V
Sbjct: 296 QVHRHVSEPPPSYFSNNAKANGRSQEDLDVVLQQKLVINDSLV 338


>10_03_0013 + 7045552-7045686,7045868-7046083
          Length = 116

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 300 IVAI*FSKKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHAR 166
           + AI  +K+K    R     A  FAE+      R+G + + +HA+
Sbjct: 56  LAAIENTKRKRNEERELRKMAREFAEKNERAKERAGKVDRAQHAK 100


>04_04_1409 + 33359206-33359643
          Length = 145

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 219 VVLQTNELCHRVHGRVHVSF--LKTKLQQLYV 308
           VVL    +CHRVH   H  +  L   L++++V
Sbjct: 59  VVLDGRSICHRVHLSKHTGYRSLAAALRRMFV 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,635,547
Number of Sequences: 37544
Number of extensions: 130890
Number of successful extensions: 406
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)