Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k22
(329 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY059435-1|AAL13341.1| 609|Drosophila melanogaster GH02003p pro... 31 0.46
AE014296-2294|AAF49806.1| 516|Drosophila melanogaster CG32130-P... 31 0.46
AE014296-2293|AAF49808.1| 516|Drosophila melanogaster CG32130-P... 31 0.46
AE014296-2292|AAF49807.1| 542|Drosophila melanogaster CG32130-P... 31 0.46
AE014296-2291|AAF49809.2| 609|Drosophila melanogaster CG32130-P... 31 0.46
AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-P... 29 1.4
DQ465527-1|ABF00987.1| 2501|Drosophila melanogaster mushroom bod... 28 3.3
AY058595-1|AAL13824.1| 372|Drosophila melanogaster LD29039p pro... 28 3.3
AF174134-3|AAF88146.1| 2501|Drosophila melanogaster Mud protein ... 28 3.3
AE014298-2022|AAF48362.2| 2328|Drosophila melanogaster CG12047-P... 28 3.3
AE014298-2021|AAN09583.2| 2520|Drosophila melanogaster CG12047-P... 28 3.3
BT023891-1|ABA81825.1| 505|Drosophila melanogaster LP23312p pro... 27 5.7
AL121806-11|CAB58086.1| 505|Drosophila melanogaster EG:BACR42I1... 27 5.7
AE014298-163|AAF45595.1| 505|Drosophila melanogaster CG11382-PB... 27 5.7
AF145673-1|AAD38648.1| 950|Drosophila melanogaster BcDNA.GH1219... 27 7.5
AE014296-2034|AAF50006.2| 2523|Drosophila melanogaster CG32092-P... 27 7.5
AE013599-1030|AAF58840.1| 950|Drosophila melanogaster CG4001-PA... 27 7.5
AY069833-1|AAL39978.1| 895|Drosophila melanogaster SD07911p pro... 26 10.0
AF068271-1|AAC19245.1| 893|Drosophila melanogaster mutL homolog... 26 10.0
AE013599-2050|AAF58142.1| 899|Drosophila melanogaster CG8169-PA... 26 10.0
>AY059435-1|AAL13341.1| 609|Drosophila melanogaster GH02003p
protein.
Length = 609
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -1
Query: 260 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 87
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 437 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 483
>AE014296-2294|AAF49806.1| 516|Drosophila melanogaster CG32130-PD,
isoform D protein.
Length = 516
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -1
Query: 260 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 87
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 344 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 390
>AE014296-2293|AAF49808.1| 516|Drosophila melanogaster CG32130-PB,
isoform B protein.
Length = 516
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -1
Query: 260 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 87
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 344 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 390
>AE014296-2292|AAF49807.1| 542|Drosophila melanogaster CG32130-PC,
isoform C protein.
Length = 542
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -1
Query: 260 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 87
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 370 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 416
>AE014296-2291|AAF49809.2| 609|Drosophila melanogaster CG32130-PA,
isoform A protein.
Length = 609
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -1
Query: 260 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 87
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 437 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 483
>AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-PA
protein.
Length = 1284
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 282 SKKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHHRILKRAG 136
S +KH+H R S R G RSG ++H R H AG
Sbjct: 533 STRKHKHRHRRTSDNESELSRGSGRSGRSGRSHHRKHRRSHRHRRDSAG 581
>DQ465527-1|ABF00987.1| 2501|Drosophila melanogaster mushroom body
defect protein protein.
Length = 2501
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 279 KKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHHR 154
K + + + GR D+A + R+ H A++ + + LH+R
Sbjct: 2228 KLRRDRIMGRFDEARHLDQMRLSHSAQAAKSPENNNYSLHNR 2269
>AY058595-1|AAL13824.1| 372|Drosophila melanogaster LD29039p
protein.
Length = 372
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 279 KKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHHR 154
K + + + GR D+A + R+ H A++ + + LH+R
Sbjct: 99 KLRRDRIMGRFDEARHLDQMRLSHSAQAAKSPENNNYSLHNR 140
>AF174134-3|AAF88146.1| 2501|Drosophila melanogaster Mud protein
protein.
Length = 2501
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 279 KKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHHR 154
K + + + GR D+A + R+ H A++ + + LH+R
Sbjct: 2228 KLRRDRIMGRFDEARHLDQMRLSHSAQAAKSPENNNYSLHNR 2269
>AE014298-2022|AAF48362.2| 2328|Drosophila melanogaster CG12047-PA,
isoform A protein.
Length = 2328
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 279 KKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHHR 154
K + + + GR D+A + R+ H A++ + + LH+R
Sbjct: 2055 KLRRDRIMGRFDEARHLDQMRLSHSAQAAKSPENNNYSLHNR 2096
>AE014298-2021|AAN09583.2| 2520|Drosophila melanogaster CG12047-PB,
isoform B protein.
Length = 2520
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 279 KKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHHR 154
K + + + GR D+A + R+ H A++ + + LH+R
Sbjct: 2247 KLRRDRIMGRFDEARHLDQMRLSHSAQAAKSPENNNYSLHNR 2288
>BT023891-1|ABA81825.1| 505|Drosophila melanogaster LP23312p
protein.
Length = 505
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -3
Query: 264 HVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHH 157
H +G H FA GH G S H R HH
Sbjct: 94 HFKGESSYGHHFAH---GHSGSHGYASSSGHGRPHH 126
>AL121806-11|CAB58086.1| 505|Drosophila melanogaster
EG:BACR42I17.10 protein.
Length = 505
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -3
Query: 264 HVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHH 157
H +G H FA GH G S H R HH
Sbjct: 94 HFKGESSYGHHFAH---GHSGSHGYASSSGHGRPHH 126
>AE014298-163|AAF45595.1| 505|Drosophila melanogaster CG11382-PB
protein.
Length = 505
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -3
Query: 264 HVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHH 157
H +G H FA GH G S H R HH
Sbjct: 94 HFKGESSYGHHFAH---GHSGSHGYASSSGHGRPHH 126
>AF145673-1|AAD38648.1| 950|Drosophila melanogaster BcDNA.GH12192
protein.
Length = 950
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 287 SFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYT 159
S KR SVD + K +R DV+D + V + + +T
Sbjct: 144 SAPKRKCGKSVDELRKCLRTMQDVIDFVHPVKPFKDKGLAVFT 186
>AE014296-2034|AAF50006.2| 2523|Drosophila melanogaster CG32092-PB
protein.
Length = 2523
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 296 LQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPD-YTIESLN 144
L+FSF + NM + + +R + V+D R V S PD +TI N
Sbjct: 2448 LRFSFAEFNMGSESNCDLDNVRFYDSVVDDQRLVKAICGSRIPDMFTIAKNN 2499
>AE013599-1030|AAF58840.1| 950|Drosophila melanogaster CG4001-PA,
isoform A protein.
Length = 950
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 287 SFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYT 159
S KR SVD + K +R DV+D + V + + +T
Sbjct: 144 SAPKRKCGKSVDELRKCLRTMQDVIDFVHPVKPFKDKGLAVFT 186
>AY069833-1|AAL39978.1| 895|Drosophila melanogaster SD07911p
protein.
Length = 895
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 89 QLVFLLAFHLKNQTVC-PARLRILWCNRACR 178
+L+F+L T+C P+R+R ++ +RACR
Sbjct: 806 ELIFMLQ-DAPEGTICRPSRVRAMFASRACR 835
>AF068271-1|AAC19245.1| 893|Drosophila melanogaster mutL homolog
PMS2 protein.
Length = 893
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 89 QLVFLLAFHLKNQTVC-PARLRILWCNRACR 178
+L+F+L T+C P+R+R ++ +RACR
Sbjct: 804 ELIFMLQ-DAPEGTICRPSRVRAMFASRACR 833
>AE013599-2050|AAF58142.1| 899|Drosophila melanogaster CG8169-PA
protein.
Length = 899
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 89 QLVFLLAFHLKNQTVC-PARLRILWCNRACR 178
+L+F+L T+C P+R+R ++ +RACR
Sbjct: 810 ELIFMLQ-DAPEGTICRPSRVRAMFASRACR 839
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,318,331
Number of Sequences: 53049
Number of extensions: 242675
Number of successful extensions: 735
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 714329562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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