Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k22
(329 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 32 0.084
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 30 0.45
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 30 0.45
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 30 0.45
Z83127-5|CAB05628.2| 575|Caenorhabditis elegans Hypothetical pr... 27 3.2
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 27 3.2
Z74043-6|CAA98543.1| 124|Caenorhabditis elegans Hypothetical pr... 27 4.2
U82967-1|AAB40926.1| 124|Caenorhabditis elegans MAX-like-1 homo... 27 4.2
Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical pr... 26 5.5
AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. 26 5.5
AF016675-3|AAB66138.2| 396|Caenorhabditis elegans Hypothetical ... 26 5.5
Z78539-3|CAB01730.1| 177|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical pr... 25 9.7
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 32.3 bits (70), Expect = 0.084
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -1
Query: 233 RLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 105
R Q D+L + + Q L +D DY ++ LN P K FD L +++
Sbjct: 275 RCQGDILKITEKFQQILANDLHDYYVDVLNMP-KYFDRLAKLM 316
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 29.9 bits (64), Expect = 0.45
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = -1
Query: 263 TSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDF-LDEMLTKKLIE 87
TS+ + +++ + + E Q + + +IE+LN+ K L+E TKK E
Sbjct: 77 TSIKDLLEILEIIQKIFKKQDEFQQV--QENQNKSIENLNSELKTVKAELNE--TKKQQE 132
Query: 86 SNAMVFDETNKNLKFIHNSI 27
S + D ++KNLK I SI
Sbjct: 133 SQEKLIDNSDKNLKLILESI 152
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 270 HEHVRGRGDKAHSFAERRVGHDARSGPISKQRHA 169
H ++G G H +GHD + P++ RHA
Sbjct: 514 HMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHA 547
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 270 HEHVRGRGDKAHSFAERRVGHDARSGPISKQRHA 169
H ++G G H +GHD + P++ RHA
Sbjct: 511 HMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHA 544
>Z83127-5|CAB05628.2| 575|Caenorhabditis elegans Hypothetical
protein T23F6.5 protein.
Length = 575
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 113 HLKNQTVCPARLRILWCNRACRCLDIGPLRASCPTRR 223
H +C R + +C + CR LD A C +R
Sbjct: 304 HSSTARMCVGRPGLAYCRQKCRALDASESSARCLRQR 340
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 287 SFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNS--DTPDYTIESLNA 141
+ QK ++D + L D+LDM E+ + ++ DTPD L A
Sbjct: 114 TMQKEYKKMNIDQIEDLQDQMEDMLDMNNEIQEAMSRQYDTPDIDEADLEA 164
>Z74043-6|CAA98543.1| 124|Caenorhabditis elegans Hypothetical
protein T19B10.11 protein.
Length = 124
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 213 GHDARSGPISKQRHARLHHRILKR 142
G SGP +RHAR H L+R
Sbjct: 16 GSGEHSGPFDPKRHAREQHNALER 39
>U82967-1|AAB40926.1| 124|Caenorhabditis elegans MAX-like-1 homolog
protein.
Length = 124
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 213 GHDARSGPISKQRHARLHHRILKR 142
G SGP +RHAR H L+R
Sbjct: 16 GSGEHSGPFDPKRHAREQHNALER 39
>Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical
protein F54F7.5 protein.
Length = 966
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -1
Query: 287 SFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFL 117
+FQ N N ++ + L V+D++R + Y DYT E+++A K+ +FL
Sbjct: 652 NFQVHNFNERIEK--QAYWLMATVVDVVRR-ELYSLKVPKDYTPETISAMRKELEFL 705
>AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein.
Length = 966
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -1
Query: 287 SFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFL 117
+FQ N N ++ + L V+D++R + Y DYT E+++A K+ +FL
Sbjct: 652 NFQVHNFNERIEK--QAYWLMATVVDVVRR-ELYSLKVPKDYTPETISAMRKELEFL 705
>AF016675-3|AAB66138.2| 396|Caenorhabditis elegans Hypothetical
protein T27B7.6 protein.
Length = 396
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 233 RLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 105
R Q D+L + + + L +D Y +E +N P + F L +L
Sbjct: 313 RYQGDILRVAEQFQEILANDLHHYYVEEMNRP-RYFQRLARLL 354
>Z78539-3|CAB01730.1| 177|Caenorhabditis elegans Hypothetical
protein C31E10.4 protein.
Length = 177
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 290 FSFQKRNMNTSVDAVTKLIRLQNDVL-DMMREVDQYLNSDTPDYTIESLNAPGKQFDFLD 114
F +KR +N + + + N L D+ Y + PD I NAP +DF+D
Sbjct: 59 FQKKKRGLNFGLYTSPAIQLISNPNLKDIFINNMAYPYTPGPDRFIIRNNAPNLFYDFID 118
Query: 113 EMLTKKLIESN 81
M + ++SN
Sbjct: 119 CMNYETSVKSN 129
>Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical
protein C09G9.4 protein.
Length = 611
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 240 LCHRVHGRVHVSFLKTKLQQLYVSTI 317
+CH H R H F L L STI
Sbjct: 179 ICHTHHPRYHAKFAGKSLADLVASTI 204
>Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical
protein T10G3.6 protein.
Length = 97
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 299 LLQFSFQKRNMNTSVDAVTKLIRLQND--VLDMMREVDQYLNSDTPDYTI 156
+L FSF K + V ++ L+ND + + VDQYLN D T+
Sbjct: 1 MLFFSFFKSLVGKDV-----VVELKNDLSICGTLHSVDQYLNMKLTDITV 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,964,785
Number of Sequences: 27780
Number of extensions: 127565
Number of successful extensions: 432
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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