Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k18
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 240 9e-65
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 240 9e-65
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 30 0.22
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 28 1.2
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 2.1
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 4.8
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 4.8
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 8.4
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 240 bits (588), Expect = 9e-65
Identities = 107/158 (67%), Positives = 139/158 (87%)
Frame = -1
Query: 478 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 299
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 298 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 119
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 118 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 5
+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNG 158
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 240 bits (588), Expect = 9e-65
Identities = 107/158 (67%), Positives = 139/158 (87%)
Frame = -1
Query: 478 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 299
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 298 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 119
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 118 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 5
+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNG 158
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 30.3 bits (65), Expect = 0.22
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 9 LLMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAMPI-TSSREMLPL 179
L++SS R LPS + P V R+ ++PE DLFL I A+ + TSS+ +LPL
Sbjct: 1455 LMLSSPRDFF-LPS-LPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = -1
Query: 310 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 131
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 130 RNRSMARYLSGSVKEI 83
RNR L +V I
Sbjct: 83 RNRKARENLKVNVSSI 98
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 45 PSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIF 191
P+ +P + PR T +R + + + P TSSR LPL +++
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 176 RQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 84
+ H+ +C HC H + PVP +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 182 TQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 84
T+ H P + HC H + + PVP +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 197 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 304
+FT+ R LK + CR N + GLS C +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 399 DDVAPTSPPTHRKFTILI 452
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,550
Number of Sequences: 5004
Number of extensions: 51633
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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