Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k17
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    31   0.75 
AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      28   7.0  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    28   7.0  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    28   7.0  
AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = -3

Query: 687 RKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRR 550
           RK + +++++  A R+R K+ K+   R KKR+ R + +A+  + RR
Sbjct: 860 RKAKKRKRDEEEAERLREKVRKREERREKKRR-RAIRRAEREKQRR 904


>AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical
           protein F53H1.4b protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -3

Query: 702 MILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAW 523
           +ILSSR+++ K+KE+    + +++  +K     K++K     K    +  ++   E+ A 
Sbjct: 193 VILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEEKAA 252

Query: 522 R 520
           R
Sbjct: 253 R 253


>AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical
           protein F53H1.4c protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -3

Query: 702 MILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAW 523
           +ILSSR+++ K+KE+    + +++  +K     K++K     K    +  ++   E+ A 
Sbjct: 229 VILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEEKAA 288

Query: 522 R 520
           R
Sbjct: 289 R 289


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -3

Query: 702 MILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAW 523
           +ILSSR+++ K+KE+    + +++  +K     K++K     K    +  ++   E+ A 
Sbjct: 229 VILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEEKAA 288

Query: 522 R 520
           R
Sbjct: 289 R 289


>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 471 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 590
           RYNY    D T+  + + R   HF+ + L   A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 544 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 633
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 544 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 633
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 544 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 633
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 544 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 633
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 544 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 633
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical
           protein W03F8.2 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 547 HSSWAMQLCLWHYSTFSLFCPWVHLLHYLHPHSACASLLLFFYSH 681
           H+S    LC +   +  +F   VHL+H   P    A  +L F SH
Sbjct: 18  HTSSLKNLCTFRRRSIQVFQKIVHLVHLQTPFLLKALRILTFLSH 62


>Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical
           protein ZK863.8 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 4   YMYKQTIISFSF*NEKSFGKFNYMSTSSSLIQNDCLTKYLDDA 132
           Y YK  + S  F N+K+F       +S+  IQN C+    D A
Sbjct: 50  YCYKSYLESRDFNNDKTFVSGRACGSSNLCIQNGCVGTNTDKA 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,325,901
Number of Sequences: 27780
Number of extensions: 272608
Number of successful extensions: 555
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)