Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k16
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0515 + 34457933-34458343,34458822-34459000,34459491-344598... 31 1.3
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 31 1.7
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 31 1.7
06_03_0419 - 20583812-20584123,20585911-20586006,20586195-205862... 29 5.1
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 29 6.7
04_03_0433 + 15878709-15878798,15879271-15879336,15880608-158807... 29 6.7
>03_06_0515 +
34457933-34458343,34458822-34459000,34459491-34459812,
34459945-34460025
Length = 330
Score = 31.1 bits (67), Expect = 1.3
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +1
Query: 82 QRGEYQQEWTEYFQQWKQRLQDRLHHVP-----EPPERTDIRHNIVMYALNERGP 231
QRGE ++ + WK+ +Q+RL H P +PP+RT R N+ + L E GP
Sbjct: 54 QRGERRELRA---RDWKEEVQERLIHEPARRRKKPPKRT-WRENLNLDFLAEHGP 104
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 30.7 bits (66), Expect = 1.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 91 EYQQEWTEYFQQWKQRLQDRLHHVPE 168
E+ W++ Q+W +R++ +L HVP+
Sbjct: 1889 EWNGPWSDSSQEWTERMKHKLKHVPQ 1914
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 30.7 bits (66), Expect = 1.7
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -3
Query: 804 NLYNLDHIEMNVNFYELLFPLTLYNDND 721
++Y L ++++ +E++FPL +NDND
Sbjct: 306 SMYQLMQPQIDIILFEIIFPLMCFNDND 333
>06_03_0419 -
20583812-20584123,20585911-20586006,20586195-20586298,
20586565-20586649
Length = 198
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 684 NLPIDEKAFCHCYHCHCTVSMETATRKNLHSFQYDRDCTGLAF*ASCHSWR 836
N+ + KAFC CY T + + +L + G ++ +CH WR
Sbjct: 112 NVQLTSKAFC-CYEAEGTTLRDASCALHLKNEAACHPSCGQSYLKACHFWR 161
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 723 DNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRETFNVFGPFKQ 592
D + LS + + L S YF C K + +R F ++G Q
Sbjct: 861 DGGSENLSSSVADSQTLMSLYFALCTKKHSLLRHVFAIYGSLPQ 904
>04_03_0433 +
15878709-15878798,15879271-15879336,15880608-15880743,
15880813-15880900,15881674-15881826,15882214-15882376,
15882446-15882630,15882696-15882869,15883222-15883367,
15883498-15883621,15883702-15883882,15884986-15885145,
15885235-15885276,15885349-15885467,15885548-15885746,
15886263-15886394,15887546-15887649,15887750-15887929,
15888202-15888249
Length = 829
Score = 28.7 bits (61), Expect = 6.7
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 804 NLYNLDHIEMNVNFYELLFPLTLYNDND 721
++Y L ++++ +E++FPL +ND+D
Sbjct: 357 SMYQLMQPQIDIILFEIIFPLMCFNDSD 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,386,659
Number of Sequences: 37544
Number of extensions: 409216
Number of successful extensions: 1040
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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