Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k16
         (905 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025818-1|ABF85718.1| 1416|Drosophila melanogaster IP03271p pro...    30   5.0  
AF053358-1|AAC35280.1| 1383|Drosophila melanogaster guanine nucl...    30   5.0  
AE014298-952|AAF46200.2| 1571|Drosophila melanogaster CG3126-PA,...    30   5.0  
AE014298-951|AAO41635.1| 1520|Drosophila melanogaster CG3126-PB,...    30   5.0  
AY069822-1|AAL39967.1|  655|Drosophila melanogaster SD07188p pro...    29   8.8  
AY058592-1|AAL13821.1| 1311|Drosophila melanogaster LD28477p pro...    29   8.8  
AF217802-1|AAG40586.1| 1311|Drosophila melanogaster xnp/atr-x DN...    29   8.8  
AE014297-3805|AAN14055.1| 1311|Drosophila melanogaster CG4548-PB...    29   8.8  
AE014297-3804|AAF56471.1| 1311|Drosophila melanogaster CG4548-PA...    29   8.8  

>BT025818-1|ABF85718.1| 1416|Drosophila melanogaster IP03271p protein.
          Length = 1416

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 880  RILQLQKFFRDFTXRRQLWQLAQKAKP 800
            RI++    F+DF    ++WQ+++K KP
Sbjct: 1382 RIIRFFDNFKDFMGEEEMWQISEKIKP 1408


>AF053358-1|AAC35280.1| 1383|Drosophila melanogaster guanine
            nucleotide exchange factorDC3G protein.
          Length = 1383

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 880  RILQLQKFFRDFTXRRQLWQLAQKAKP 800
            RI++    F+DF    ++WQ+++K KP
Sbjct: 1349 RIIRFFDNFKDFMGEEEMWQISEKIKP 1375


>AE014298-952|AAF46200.2| 1571|Drosophila melanogaster CG3126-PA,
            isoform A protein.
          Length = 1571

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 880  RILQLQKFFRDFTXRRQLWQLAQKAKP 800
            RI++    F+DF    ++WQ+++K KP
Sbjct: 1537 RIIRFFDNFKDFMGEEEMWQISEKIKP 1563


>AE014298-951|AAO41635.1| 1520|Drosophila melanogaster CG3126-PB,
            isoform B protein.
          Length = 1520

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 880  RILQLQKFFRDFTXRRQLWQLAQKAKP 800
            RI++    F+DF    ++WQ+++K KP
Sbjct: 1486 RIIRFFDNFKDFMGEEEMWQISEKIKP 1512


>AY069822-1|AAL39967.1|  655|Drosophila melanogaster SD07188p
           protein.
          Length = 655

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 819 LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 685
           LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 543 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 591


>AY058592-1|AAL13821.1| 1311|Drosophila melanogaster LD28477p protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 819  LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 685
            LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 1199 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 1247


>AF217802-1|AAG40586.1| 1311|Drosophila melanogaster xnp/atr-x DNA
            helicase protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 819  LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 685
            LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 1199 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 1247


>AE014297-3805|AAN14055.1| 1311|Drosophila melanogaster CG4548-PB,
            isoform B protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 819  LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 685
            LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 1199 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 1247


>AE014297-3804|AAF56471.1| 1311|Drosophila melanogaster CG4548-PA,
            isoform A protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 819  LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 685
            LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 1199 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 1247


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,318,930
Number of Sequences: 53049
Number of extensions: 769005
Number of successful extensions: 2305
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2297
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4423507848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)