Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k16
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   2.9  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   2.9  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   2.9  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   2.9  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   2.9  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   2.9  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   2.9  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   2.9  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   2.9  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   2.9  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   3.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.7  

>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 320 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 362


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 849 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 320 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 362


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 831 NYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 724
           NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 93  NYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 690 VNYIFLASNYFQNCAKNFNYM 628
           ++YIFL  N FQ+ +++F  +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 690 VNYIFLASNYFQNCAKNFNYM 628
           ++YIFL  N FQ+ +++F  +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 15  NRRNSNVICKKCQTFKIVRKTHATRRVS 98
           +RRN  V+ K  +T + +      RR+S
Sbjct: 335 DRRNIEVVAKNKETLQAITGLKVKRRIS 362


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 690 VNYIFLASNYFQNCAKNFNYM 628
           ++YIFL  N FQ+ +++F  +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,791
Number of Sequences: 438
Number of extensions: 5625
Number of successful extensions: 42
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)