Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k15
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    42   1e-04
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.85 
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    28   1.5  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   7.9  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = -2

Query: 566 FGSLIIGYARNPSLKQQLFSYAILGFALSE 477
           F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 273 AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 359
           A  R NT Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 831 YKKQNAVCRQTDRPCSQVCHLLQLCTG-ATTCSSTHPYTDGTCC 703
           +K    +CRQ+  PC +     + CTG ++ C     + DG  C
Sbjct: 367 FKNAGTLCRQSTNPCDKP----EFCTGISSKCPVDENWDDGRIC 406



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/51 (21%), Positives = 20/51 (39%)
 Frame = -1

Query: 858 KVCLSRAAPYKKQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 706
           ++C          + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 404 RICQDSLGMGSCASGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 6   DADTLEQITPITKPDVNTHAKYTRSTGFIFILSSNFVMF 122
           D DT+  ITP TK D       T +  F+F+L S ++ F
Sbjct: 470 DGDTVT-ITPATKSDKGWAGFLTFAFSFVFLLFSIWLYF 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,494
Number of Sequences: 5004
Number of extensions: 72132
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)