Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k15
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    77   2e-14
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    77   2e-14
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    77   2e-14
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    31   1.1  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    29   3.2  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    29   5.6  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   5.6  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    29   5.6  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    29   5.6  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   5.6  
Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 41/70 (58%), Positives = 44/70 (62%)
 Frame = -2

Query: 686 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFS 507
           A R   TT   KDIDSAAK+                   VFG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 506 YAILGFALSE 477
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 41/70 (58%), Positives = 44/70 (62%)
 Frame = -2

Query: 686 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFS 507
           A R   TT   KDIDSAAK+                   VFG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 506 YAILGFALSE 477
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 41/70 (58%), Positives = 44/70 (62%)
 Frame = -2

Query: 686 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFS 507
           A R   TT   KDIDSAAK+                   VFG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 506 YAILGFALSE 477
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +3

Query: 570 CSNTS-SGTSYSHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGY 734
           CS+ + S    SHC  T    +   RV   ++ C    P CR   +LC  SRY   M  Y
Sbjct: 296 CSHPAFSEVMASHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENY 355

Query: 735 CCKWSHQC 758
           C K    C
Sbjct: 356 CPKACGHC 363


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
 Frame = -1

Query: 861  RKVCLSRAAPYKKQNAVCRQTDRPC----SQVCHLLQLCTGATTC-------SSTHPYTD 715
            RK C+  AA +     +C+Q   P        C + + CTG  TC          H   D
Sbjct: 1411 RKRCIC-AAQHVAIRGICKQKSAPAFAAPGDTCSMREKCTGGATCFEGMCTCDDHHFAED 1469

Query: 714  GTCCPYTALCSAV 676
            G C P  A  S V
Sbjct: 1470 GYCRPIEARSSKV 1482


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 389 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 303
           P + VSVY I    PWN +F    ++V Q
Sbjct: 29  PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 759 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 670
           C+    C +     D  CCPY + C A  P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -1

Query: 819 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 694
           N  C     P       +  C+  T C+S +   +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
 Frame = +3

Query: 465  QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 641
            Q+ S + G   +G   + L   G  G   D+  + CS  S G + S  C C       + 
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568

Query: 642  VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQC 758
               +    G  GP C E CR  RY     G  C+   QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
 Frame = +3

Query: 465  QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 641
            Q+ S + G   +G   + L   G  G   D+  + CS  S G + S  C C       + 
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568

Query: 642  VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQC 758
               +    G  GP C E CR  RY     G  C+   QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 433 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 561
           KSSR  I  ++  I     KP    E N C+ + FLA PM  E
Sbjct: 21  KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63


>Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical
           protein C08B6.6 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 264 PVDAHCRCNTHQSLHHYEGEV 326
           P+   CRCNT  +LH  EG V
Sbjct: 98  PIYVLCRCNTTNTLHRREGVV 118


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = +3

Query: 399 VVFLKVNSLESEEQQERHHKT---EQTHSLRQGETQNGV*EQLLLEGGVPGIADD----- 554
           V+    +S E E+++ERH  +   ++T S+R   T +    + +++  +  +A       
Sbjct: 9   VIIDSSDSSEDEDRKERHSSSSEVDETASMRS--TDSSEPPRTIIDASLNSMASTVYTST 66

Query: 555 -EGAEDCSNTSSGTSYSHCRCTSTNEFGSR 641
               +  S T S T+Y   +C++ + + SR
Sbjct: 67  PNSKQSISRTGSSTTYGSSKCSTDDHYRSR 96


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -1

Query: 852 CLSRAAPYKKQNAVCRQT-DRPCSQVCHLLQLCTGATT---CSSTHPYTDGTCC 703
           C S A   + Q  +C+QT    C Q   ++  C  +++   CSS +    G+CC
Sbjct: 318 CQSSATVLQCQ-PICQQTCQNTCQQAAQIVVPCQSSSSGCGCSSGYSQCGGSCC 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,203,963
Number of Sequences: 27780
Number of extensions: 443029
Number of successful extensions: 1525
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)