Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k14
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157...    30   2.2  
07_01_0305 - 2181727-2184793,2185635-2185945                           29   5.0  
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556...    29   5.0  
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221...    29   5.0  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     29   5.0  
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553...    28   8.7  
07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373...    28   8.7  

>04_04_0411 -
           25014511-25015015,25015098-25015169,25015700-25015734,
           25015805-25015873,25015993-25016044,25016444-25016526,
           25016625-25016726,25017150-25017884,25017962-25018012,
           25018792-25018983,25019066-25019216,25020012-25020193,
           25020329-25020532,25020752-25020859
          Length = 846

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -1

Query: 240 TKSNDRLN-NENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRK 67
           +KS+++ N  +   +  +++  + V+    R  R +AK     S  KK   G+     +K
Sbjct: 460 SKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSFKKTGEGESSKKKQK 519

Query: 66  R-LKQHTNTPPHYDTSED 16
             LKQ  +TPP  DT ED
Sbjct: 520 ENLKQQEDTPPDEDTDED 537


>07_01_0305 - 2181727-2184793,2185635-2185945
          Length = 1125

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -1

Query: 201 TDYDTEDEERVNTFNSRKRRVV----AKRAFNSKSKKIPIG 91
           +DYD  ++ R      +K+R+V    +++   SK  K P+G
Sbjct: 297 SDYDKRNKRRYTRLKKKKKRIVVSNFSRKNLGSKGNKFPVG 337


>04_04_1107 -
           30954647-30954769,30955052-30955141,30955309-30955617,
           30955732-30955842,30955945-30956379,30956452-30956610,
           30957044-30957994,30959016-30959483
          Length = 881

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 438 VEAFTKYHKMNGGDEDIAMHKARKALE 358
           +E F K HK NGG  +    KA++ +E
Sbjct: 683 LEIFNKTHKFNGGTGEFVSEKAKRIVE 709


>03_05_0211 -
           22020515-22020687,22020801-22020831,22022060-22022169,
           22022715-22023102,22023344-22023397,22023739-22023849,
           22023956-22024015,22024618-22024694,22026155-22026188,
           22026267-22027235
          Length = 668

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -1

Query: 228 DRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHT 49
           D + +++   DYD+E E+     +  K     K+A    S K        TPR   K  +
Sbjct: 465 DPMKSDSEEDDYDSEKEKAKKNSSDAKDTASKKKAATGSSHK------TGTPRTVSKSSS 518

Query: 48  NTPPHYDTSEDEDEDN 1
            TP    + E E  ++
Sbjct: 519 KTPSSKVSKEKESPED 534


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 120  NSKSKKIPIGKVVSTPRKRLKQHTNTPPHYDTSEDEDE 7
            N+K     +G VV +P K     T     + TSEDE+E
Sbjct: 2430 NTKENNKMVGVVVDSPEKHTSLETLETREHVTSEDEEE 2467


>11_04_0057 -
           12953479-12954364,12954484-12955034,12955125-12955342,
           12957514-12957678,12960562-12960898
          Length = 718

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -2

Query: 209 TLARIMTLKTKSASTRLIVVNGESSLSGRLIRNPKKFLSAKWCRRRVND*NNTQTHHRIM 30
           T+A+ M  K+ +  +   V + +S ++ R   +     S+ W RRR++  NNT   HR  
Sbjct: 38  TMAKNMAPKSSALGSNPEVRHAQSKIAIRTSADELNCGSSTWKRRRISG-NNTL--HRNR 94

Query: 29  TPAKMRT 9
           +PA   T
Sbjct: 95  SPASKNT 101


>07_03_0902 - 22435692-22436156,22436684-22436923,22437228-22437349,
            22437441-22437587,22437753-22437882,22437981-22438116,
            22438223-22438428,22438644-22438844,22438999-22439157,
            22439781-22439858,22440453-22440542,22440625-22440777,
            22440873-22440991,22441190-22441328,22441422-22441525,
            22441944-22441989,22442087-22442252,22442356-22442383,
            22442460-22442610,22442686-22442829,22442912-22443013,
            22443566-22444093
          Length = 1217

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 428  LQSIIK*TAATKTLLCIKLEKRSKKSTLK*IH 333
            LQS+++   A K   C+K EK SK S  K IH
Sbjct: 940  LQSVMRGCLARKKYKCLKEEKDSKASHRKVIH 971


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,567
Number of Sequences: 37544
Number of extensions: 251060
Number of successful extensions: 660
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)