Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k14
         (726 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC016738-3|AAY14824.1|  897|Homo sapiens unknown protein.              31   3.2  
AB024057-1|BAA75489.1|  897|Homo sapiens vascular Rab-GAP/TBC-co...    31   3.2  
AB017114-1|BAA76517.1|  733|Homo sapiens AD 3 protein.                 31   3.2  

>AC016738-3|AAY14824.1|  897|Homo sapiens unknown protein.
          Length = 897

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 66  RLKQ-HTNTPPHYDTSEDED 10
           RLKQ H N P HYDTS D+D
Sbjct: 147 RLKQVHANHPVHYDTSADDD 166


>AB024057-1|BAA75489.1|  897|Homo sapiens vascular
           Rab-GAP/TBC-containing protein protein.
          Length = 897

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 66  RLKQ-HTNTPPHYDTSEDED 10
           RLKQ H N P HYDTS D+D
Sbjct: 147 RLKQVHANHPVHYDTSADDD 166


>AB017114-1|BAA76517.1|  733|Homo sapiens AD 3 protein.
          Length = 733

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 66  RLKQ-HTNTPPHYDTSEDED 10
           RLKQ H N P HYDTS D+D
Sbjct: 143 RLKQVHANHPVHYDTSADDD 162


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,951,219
Number of Sequences: 237096
Number of extensions: 1321742
Number of successful extensions: 3538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3538
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)