Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k14
(726 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY119612-1|AAM50266.1| 315|Drosophila melanogaster LD38004p pro... 33 0.40
AY051922-1|AAK93346.1| 535|Drosophila melanogaster LD40717p pro... 33 0.40
AE014296-533|AAF47703.1| 535|Drosophila melanogaster CG2162-PA ... 33 0.40
AF132183-1|AAD34771.1| 834|Drosophila melanogaster unknown prot... 32 0.69
AE014297-2518|AAF55551.2| 834|Drosophila melanogaster CG18617-P... 32 0.69
AE014297-2517|AAF55552.2| 834|Drosophila melanogaster CG18617-P... 32 0.69
AY069397-1|AAL39542.1| 669|Drosophila melanogaster LD10094p pro... 32 0.91
AJ459408-1|CAD30679.1| 612|Drosophila melanogaster DEK protein ... 32 0.91
AE013599-2360|AAM70892.1| 669|Drosophila melanogaster CG5935-PB... 32 0.91
AE013599-2359|AAS64830.2| 612|Drosophila melanogaster CG5935-PD... 32 0.91
AE013599-2358|AAF57943.2| 663|Drosophila melanogaster CG5935-PA... 32 0.91
AE013599-2357|AAM70891.1| 667|Drosophila melanogaster CG5935-PC... 32 0.91
AY069064-1|AAL39209.1| 759|Drosophila melanogaster GH07892p pro... 31 1.2
AE014298-2573|AAF48731.1| 759|Drosophila melanogaster CG8568-PA... 31 1.2
AY069307-1|AAL39452.1| 539|Drosophila melanogaster LD01582p pro... 30 2.8
AE014134-70|AAF51521.1| 539|Drosophila melanogaster CG11604-PA ... 30 2.8
AY094828-1|AAM11181.1| 1765|Drosophila melanogaster LD40380p pro... 30 3.7
AE014297-3524|AAF56278.2| 2232|Drosophila melanogaster CG31132-P... 30 3.7
AY122186-1|AAM52698.1| 1038|Drosophila melanogaster LD43109p pro... 29 4.9
AE013599-2800|AAF57614.1| 1038|Drosophila melanogaster CG15104-P... 29 4.9
AY121707-1|AAM52034.1| 301|Drosophila melanogaster RH58440p pro... 29 8.5
AE014298-841|AAF46120.2| 261|Drosophila melanogaster CG4660-PA ... 29 8.5
>AY119612-1|AAM50266.1| 315|Drosophila melanogaster LD38004p
protein.
Length = 315
Score = 33.1 bits (72), Expect = 0.40
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK----SKKIPIGKVVSTPRKRLKQHTN 46
E D D + +R + +R R + K+ FNS +KI + P T
Sbjct: 42 EPAKCDNDVRELQRASKEINRSNRRIMKQTFNSDVLEIPEKIETSATKAIPTSPQASATA 101
Query: 45 TPPHYDTSEDEDEDN 1
PP T+ED+DE++
Sbjct: 102 KPPVDSTTEDDDEED 116
>AY051922-1|AAK93346.1| 535|Drosophila melanogaster LD40717p
protein.
Length = 535
Score = 33.1 bits (72), Expect = 0.40
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK----SKKIPIGKVVSTPRKRLKQHTN 46
E D D + +R + +R R + K+ FNS +KI + P T
Sbjct: 262 EPAKCDNDVRELQRASKEINRSNRRIMKQTFNSDVLEIPEKIETSATKAIPTSPQASATA 321
Query: 45 TPPHYDTSEDEDEDN 1
PP T+ED+DE++
Sbjct: 322 KPPVDSTTEDDDEED 336
>AE014296-533|AAF47703.1| 535|Drosophila melanogaster CG2162-PA
protein.
Length = 535
Score = 33.1 bits (72), Expect = 0.40
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK----SKKIPIGKVVSTPRKRLKQHTN 46
E D D + +R + +R R + K+ FNS +KI + P T
Sbjct: 262 EPAKCDNDVRELQRASKEINRSNRRIMKQTFNSDVLEIPEKIETSATKAIPTSPQASATA 321
Query: 45 TPPHYDTSEDEDEDN 1
PP T+ED+DE++
Sbjct: 322 KPPVDSTTEDDDEED 336
>AF132183-1|AAD34771.1| 834|Drosophila melanogaster unknown
protein.
Length = 834
Score = 32.3 bits (70), Expect = 0.69
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 316 NPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKR 432
NP ++ CI F LF F H + V +M+LC+R
Sbjct: 390 NPALYTCITFPFLFAVMFGDLGHGLILVLFGAWMVLCER 428
>AE014297-2518|AAF55551.2| 834|Drosophila melanogaster CG18617-PB,
isoform B protein.
Length = 834
Score = 32.3 bits (70), Expect = 0.69
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 316 NPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKR 432
NP ++ CI F LF F H + V +M+LC+R
Sbjct: 390 NPALYTCITFPFLFAVMFGDLGHGLILVLFGAWMVLCER 428
>AE014297-2517|AAF55552.2| 834|Drosophila melanogaster CG18617-PA,
isoform A protein.
Length = 834
Score = 32.3 bits (70), Expect = 0.69
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 316 NPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKR 432
NP ++ CI F LF F H + V +M+LC+R
Sbjct: 390 NPALYTCITFPFLFAVMFGDLGHGLILVLFGAWMVLCER 428
>AY069397-1|AAL39542.1| 669|Drosophila melanogaster LD10094p
protein.
Length = 669
Score = 31.9 bits (69), Expect = 0.91
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQHTNTPP 37
E +D+ ++ E S+K AK + N+KSK P GK S +K K+ +
Sbjct: 533 EEDVSDFASDQSEEERPKKSKKPITPAKNSKANNKSK--PAGKADSRSKKSKKESSEEDD 590
Query: 36 HYDTSEDEDED 4
D ++ DED
Sbjct: 591 DVDDKDESDED 601
>AJ459408-1|CAD30679.1| 612|Drosophila melanogaster DEK protein
protein.
Length = 612
Score = 31.9 bits (69), Expect = 0.91
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQHTNTPP 37
E +D+ ++ E S+K AK + N+KSK P GK S +K K+ +
Sbjct: 527 EEDVSDFASDQSEEERPKKSKKPITPAKNSKANNKSK--PAGKADSRSKKSKKESSEEDD 584
Query: 36 HYDTSEDEDED 4
D ++ DED
Sbjct: 585 DVDDKDESDED 595
>AE013599-2360|AAM70892.1| 669|Drosophila melanogaster CG5935-PB,
isoform B protein.
Length = 669
Score = 31.9 bits (69), Expect = 0.91
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQHTNTPP 37
E +D+ ++ E S+K AK + N+KSK P GK S +K K+ +
Sbjct: 533 EEDVSDFASDQSEEERPKKSKKPITPAKNSKANNKSK--PAGKADSRSKKSKKESSEEDD 590
Query: 36 HYDTSEDEDED 4
D ++ DED
Sbjct: 591 DVDDKDESDED 601
>AE013599-2359|AAS64830.2| 612|Drosophila melanogaster CG5935-PD,
isoform D protein.
Length = 612
Score = 31.9 bits (69), Expect = 0.91
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQHTNTPP 37
E +D+ ++ E S+K AK + N+KSK P GK S +K K+ +
Sbjct: 527 EEDVSDFASDQSEEERPKKSKKPITPAKNSKANNKSK--PAGKADSRSKKSKKESSEEDD 584
Query: 36 HYDTSEDEDED 4
D ++ DED
Sbjct: 585 DVDDKDESDED 595
>AE013599-2358|AAF57943.2| 663|Drosophila melanogaster CG5935-PA,
isoform A protein.
Length = 663
Score = 31.9 bits (69), Expect = 0.91
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQHTNTPP 37
E +D+ ++ E S+K AK + N+KSK P GK S +K K+ +
Sbjct: 527 EEDVSDFASDQSEEERPKKSKKPITPAKNSKANNKSK--PAGKADSRSKKSKKESSEEDD 584
Query: 36 HYDTSEDEDED 4
D ++ DED
Sbjct: 585 DVDDKDESDED 595
>AE013599-2357|AAM70891.1| 667|Drosophila melanogaster CG5935-PC,
isoform C protein.
Length = 667
Score = 31.9 bits (69), Expect = 0.91
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQHTNTPP 37
E +D+ ++ E S+K AK + N+KSK P GK S +K K+ +
Sbjct: 531 EEDVSDFASDQSEEERPKKSKKPITPAKNSKANNKSK--PAGKADSRSKKSKKESSEEDD 588
Query: 36 HYDTSEDEDED 4
D ++ DED
Sbjct: 589 DVDDKDESDED 599
>AY069064-1|AAL39209.1| 759|Drosophila melanogaster GH07892p
protein.
Length = 759
Score = 31.5 bits (68), Expect = 1.2
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = -1
Query: 231 NDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIP-IGKVVSTPRKRLK- 58
ND N N D + E + RV S+ ++ K+ ++ K + K P K +K
Sbjct: 575 NDSDNEINVDDDDEVEKKNRVKEPPSQVKKEEKKQEEGAEEKSEEGVQKEEIEPEKEVKA 634
Query: 57 QHTNTPPHYDTSEDEDEDN 1
H DT+ +EDEDN
Sbjct: 635 SHEEKVNPNDTAAEEDEDN 653
>AE014298-2573|AAF48731.1| 759|Drosophila melanogaster CG8568-PA
protein.
Length = 759
Score = 31.5 bits (68), Expect = 1.2
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = -1
Query: 231 NDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIP-IGKVVSTPRKRLK- 58
ND N N D + E + RV S+ ++ K+ ++ K + K P K +K
Sbjct: 575 NDSDNEINVDDDDEVEKKNRVKEPPSQVKKEEKKQEEGAEEKSEEGVQKEEIEPEKEVKA 634
Query: 57 QHTNTPPHYDTSEDEDEDN 1
H DT+ +EDEDN
Sbjct: 635 SHEEKVNPNDTAAEEDEDN 653
>AY069307-1|AAL39452.1| 539|Drosophila melanogaster LD01582p
protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 114 KSKKIPIGKVVSTPRKRLKQHTNTPPHYDTSEDEDED 4
K KK I K+ + +KR+K D ED+DED
Sbjct: 431 KDKKASIKKIKKSSQKRMKVEPKDHDEEDDEEDDDED 467
>AE014134-70|AAF51521.1| 539|Drosophila melanogaster CG11604-PA
protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 114 KSKKIPIGKVVSTPRKRLKQHTNTPPHYDTSEDEDED 4
K KK I K+ + +KR+K D ED+DED
Sbjct: 431 KDKKASIKKIKKSSQKRMKVEPKDHDEEDDEEDDDED 467
>AY094828-1|AAM11181.1| 1765|Drosophila melanogaster LD40380p protein.
Length = 1765
Score = 29.9 bits (64), Expect = 3.7
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = -1
Query: 234 SNDRLNNENTSTDYDTEDEERVNTFN-SRKRRVVAKRAFNSKSKKIPIGKVV-------S 79
S++ + E+ D D +DEE +T SR+R VA A +S S ++ S
Sbjct: 1067 SSEDEDEEDDDDDDDDDDEEEASTRGRSRRRNGVAVSASSSGSNRVTSSSAAQQRRGKSS 1126
Query: 78 TPRKRLKQHTNTPPHYDTSEDEDE 7
+ + ++ T+ D S DE+E
Sbjct: 1127 SSEEEEEEETSAQATSDASSDEEE 1150
>AE014297-3524|AAF56278.2| 2232|Drosophila melanogaster CG31132-PA
protein.
Length = 2232
Score = 29.9 bits (64), Expect = 3.7
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = -1
Query: 234 SNDRLNNENTSTDYDTEDEERVNTFN-SRKRRVVAKRAFNSKSKKIPIGKVV-------S 79
S++ + E+ D D +DEE +T SR+R VA A +S S ++ S
Sbjct: 1534 SSEDEDEEDDDDDDDDDDEEEASTRGRSRRRNGVAVSASSSGSNRVTSSSAAQQRRGKSS 1593
Query: 78 TPRKRLKQHTNTPPHYDTSEDEDE 7
+ + ++ T+ D S DE+E
Sbjct: 1594 SSEEEEEEETSAQATSDASSDEEE 1617
>AY122186-1|AAM52698.1| 1038|Drosophila melanogaster LD43109p
protein.
Length = 1038
Score = 29.5 bits (63), Expect = 4.9
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 210 NTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK-SKKIPIGKVVSTPRKRLKQH 52
++S+D D+ D N+ +K+ KR N+K SKK IGK S RK Q+
Sbjct: 666 SSSSDEDSSDSSTTNSEPPKKKS--RKRVANNKRSKKESIGKRTSRKRKAKDQN 717
>AE013599-2800|AAF57614.1| 1038|Drosophila melanogaster CG15104-PA
protein.
Length = 1038
Score = 29.5 bits (63), Expect = 4.9
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 210 NTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK-SKKIPIGKVVSTPRKRLKQH 52
++S+D D+ D N+ +K+ KR N+K SKK IGK S RK Q+
Sbjct: 666 SSSSDEDSSDSSTTNSEPPKKKS--RKRVANNKRSKKESIGKRTSRKRKAKDQN 717
>AY121707-1|AAM52034.1| 301|Drosophila melanogaster RH58440p
protein.
Length = 301
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 1 IIFVLIFAGVIMRWCVCVLF*SFTRRRHHFAD 96
+++ L+ +R C+CVL F +RR H D
Sbjct: 57 VVYGLLELHYFLRMCLCVLLARFVKRRCHILD 88
>AE014298-841|AAF46120.2| 261|Drosophila melanogaster CG4660-PA
protein.
Length = 261
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 1 IIFVLIFAGVIMRWCVCVLF*SFTRRRHHFAD 96
+++ L+ +R C+CVL F +RR H D
Sbjct: 17 VVYGLLELHYFLRMCLCVLLARFVKRRCHILD 48
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,574,670
Number of Sequences: 53049
Number of extensions: 441309
Number of successful extensions: 1731
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1726
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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