Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k14
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical pr... 35 0.052
AF078782-1|AAC26913.1| 361|Caenorhabditis elegans Hypothetical ... 31 0.63
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 31 0.84
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 30 1.9
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 29 4.5
AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical ... 29 4.5
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ... 29 4.5
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 29 4.5
AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical ... 29 4.5
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 28 5.9
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 28 5.9
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 28 5.9
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 28 5.9
AL032645-1|CAA21674.1| 123|Caenorhabditis elegans Hypothetical ... 28 5.9
AF016425-8|AAD34667.2| 239|Caenorhabditis elegans Hypothetical ... 28 5.9
Z68882-13|CAA93102.1| 296|Caenorhabditis elegans Hypothetical p... 28 7.8
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 28 7.8
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 28 7.8
>U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical
protein F32E10.6 protein.
Length = 374
Score = 35.1 bits (77), Expect = 0.052
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -1
Query: 240 TKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK-R 64
TK + + T + D E+EE V T K+ +KRA + + +VV TP+K +
Sbjct: 237 TKKSKKSKRAETPEEEDDEEEEVVKTPKKTKK---SKRAETPEEEDEVEEEVVKTPKKSK 293
Query: 63 LKQHTNTPPHYDTSEDEDED 4
+ +TS++EDED
Sbjct: 294 SSKSPKKSKRAETSDEEDED 313
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -1
Query: 243 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 64
K+ + + ++D D E+EE V T S+K +KRA + + +VV TP+K
Sbjct: 212 KSPKKSSKSTKRAASD-DDEEEEPVATKKSKK----SKRAETPEEEDDEEEEVVKTPKKT 266
Query: 63 LK-QHTNTPPHYDTSEDE 13
K + TP D E+E
Sbjct: 267 KKSKRAETPEEEDEVEEE 284
>AF078782-1|AAC26913.1| 361|Caenorhabditis elegans Hypothetical
protein H34P18.1 protein.
Length = 361
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 625 MYFFLTAQHASLVAICVDLYFCKLRS*NFSN 717
+Y+ A HAS + + V + FC+++S NF+N
Sbjct: 116 IYYLAAAFHASSLYLAVGMAFCRVKSLNFAN 146
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 228 DRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQH 52
D + ++ Y E +N S ++RVV + A K P G V +TP K+ K
Sbjct: 748 DNFSGGGSTPSYSKSYLEEMNRVMSTRKRVVEEAAEVQKKPNPAPSG-VTATPPKKAKTS 806
Query: 51 TNTPPH 34
+ PP+
Sbjct: 807 NSVPPN 812
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/80 (20%), Positives = 41/80 (51%)
Frame = -1
Query: 243 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 64
++K + + +++S D + E + + S+K ++A +S+ + + + K +P+K
Sbjct: 297 RSKKSKKAVIDSSSEDEEEEKSSKKRSKKSKKESDEEQQASDSEEEVVEVKKNSKSPKKT 356
Query: 63 LKQHTNTPPHYDTSEDEDED 4
K+ ++S DE+E+
Sbjct: 357 PKKTAVKEESEESSGDEEEE 376
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = -1
Query: 243 KTKSNDRLNNENTST----DYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVST 76
K K RL EN D D++DE+ +++ A+++ S SKK GK
Sbjct: 172 KRKEKKRLEKENRKIKEEDDEDSDDEDDEKAKKKKRKSKGAEKSKPSTSKKDAGGK-KEP 230
Query: 75 PRKRLKQHTNTPPHYDTSEDE 13
P+K++K+ + ++ ++E
Sbjct: 231 PKKKVKKEEDIEDIWEWWKEE 251
>AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical
protein H16D19.4 protein.
Length = 416
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 295 LVGGFARNPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKRLDK*LFG 453
+ GG +P N L F F HSN +A++ + ++ K++D + G
Sbjct: 276 IAGGVTFHPSAMYTRNSNFLNFANFIIMQHSNKEIASMRYELMKKKVDSDVIG 328
>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
protein F28H6.4 protein.
Length = 1000
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -1
Query: 204 STDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHT 49
S +YD ED E + ++KR + KR NSKSK +GK PRK+ + T
Sbjct: 24 SFNYDDEDYEPPSK-RTQKRSSLTKR--NSKSKTPEVGK---APRKQTEHFT 69
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/80 (23%), Positives = 38/80 (47%)
Frame = -1
Query: 243 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 64
K++S + + + + D E+ +R +S VV + K K+ GK P+K+
Sbjct: 19 KSESKKKKDKKTFEEEDDVENVKRKPAESSDDEVVVVVVKKDQKGKR---GKKSKKPKKK 75
Query: 63 LKQHTNTPPHYDTSEDEDED 4
+ ++ + D+SE D+D
Sbjct: 76 QESSDDSSDNSDSSESSDDD 95
>AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical
protein F57B10.6 protein.
Length = 829
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -1
Query: 189 TEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHTNTPPHYDTSEDE 13
T D+ R + + R++ K+ +SK G + + RKR++QH T D E+E
Sbjct: 332 TPDDVREEIVDRLEERLIDKKERGYQSKS---GMLEAIARKRIRQHYGTETVEDKKEEE 387
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -1
Query: 174 RVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHTNTPPHYDTSEDEDEDN 1
++ +S + V++ RAFN+ PI + V T + TP H++ D D+ +
Sbjct: 793 KIARLHSERDYVISLRAFNNLGSGFPIYETVRTLSR------ETPSHFNEDSDSDDSD 844
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -1
Query: 174 RVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHTNTPPHYDTSEDEDEDN 1
++ +S + V++ RAFN+ PI + V T + TP H++ D D+ +
Sbjct: 793 KIARLHSERDYVISLRAFNNLGSGFPIYETVRTLSR------ETPSHFNEDSDSDDSD 844
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 243 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 64
+ KS +R ++ + +D+ DE +T +RR + S +K ST R+
Sbjct: 482 RPKSPNRSKKDSRAFGWDSTDESDEDT----RRRRSGRSQNRSSERKFQTTSSSSTRREL 537
Query: 63 LKQHTNTPPHYDTSE 19
HTN+ P+ + E
Sbjct: 538 SSTHTNSVPNLKSHE 552
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 243 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 64
+ KS +R ++ + +D+ DE +T +RR + S +K ST R+
Sbjct: 482 RPKSPNRSKKDSRAFGWDSTDESDEDT----RRRRSGRSQNRSSERKFQTTSSSSTRREL 537
Query: 63 LKQHTNTPPHYDTSE 19
HTN+ P+ + E
Sbjct: 538 SSTHTNSVPNLKSHE 552
>AL032645-1|CAA21674.1| 123|Caenorhabditis elegans Hypothetical
protein Y67A6A.1 protein.
Length = 123
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1
Query: 246 TKTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 67
TK KSN ++ TS D + +D+ K AK K+K+ KVV+TP+K
Sbjct: 22 TKKKSNLSISKSQTSVDMNEKDKS--------KEAKEAKELKEKKAKEEAEKKVVATPKK 73
>AF016425-8|AAD34667.2| 239|Caenorhabditis elegans Hypothetical
protein F59A7.5a protein.
Length = 239
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -1
Query: 225 RLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRL 61
R N +S+ + D++ + RK++ K+ +K KK+ K T +K+L
Sbjct: 103 RSNKNASSSGSEENDQKDGQEDHHRKKKGATKKKVTTKKKKVTTKKPKKTTKKKL 157
>Z68882-13|CAA93102.1| 296|Caenorhabditis elegans Hypothetical
protein C47E12.10 protein.
Length = 296
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 213 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 67
E + ++ +TEDE+ + N R+R+ KRA + K KKI KV + ++
Sbjct: 46 EKSESEDETEDED---SENQRRRK---KRAADKKRKKIKAAKVAAQKKE 88
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = -1
Query: 246 TKTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 67
+K KS ++ + ++E+E +V K + V KRA S+ K +K
Sbjct: 140 SKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESD-EDEKPSKKSKK 198
Query: 66 RLKQHTNTPPHYDTSEDEDE 7
LK+ + + SEDE E
Sbjct: 199 GLKKKAKSESESE-SEDEKE 217
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = -1
Query: 246 TKTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 67
+K KS ++ + ++E+E +V K + V KRA S+ K +K
Sbjct: 140 SKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESD-EDEKPSKKSKK 198
Query: 66 RLKQHTNTPPHYDTSEDEDE 7
LK+ + + SEDE E
Sbjct: 199 GLKKKAKSESESE-SEDEKE 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,495,486
Number of Sequences: 27780
Number of extensions: 243863
Number of successful extensions: 874
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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