Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k13
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 213 1e-55
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 30 1.8
U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical pr... 30 1.8
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 4.3
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 29 4.3
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 29 5.6
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 29 5.6
Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein. 28 7.4
Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical p... 28 7.4
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical ... 28 7.4
U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical p... 28 9.8
U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical p... 28 9.8
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 28 9.8
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 213 bits (521), Expect = 1e-55
Identities = 98/207 (47%), Positives = 144/207 (69%), Gaps = 1/207 (0%)
Frame = -2
Query: 860 RGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 681
RGH+I+++ E+PLVV+DKV+ KTK+AV+FLRR W+DI KVY S+R RAGKGK+RNR
Sbjct: 139 RGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNR 198
Query: 680 RRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGR 501
+ Q+ GP++I+ +D RAFRNIPGV+ LAPGGHLGR +IWT+SAF +
Sbjct: 199 QHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKK 258
Query: 500 LDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 324
LD ++G+ S Q KK +++P P MAN+D +R+++S+E+ K +RAP K + NP
Sbjct: 259 LDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNP 318
Query: 323 LTNNKAMLKLNPYAAVLKRKAILELRR 243
L + KLNPYA++L++ + +++
Sbjct: 319 LKKRTLLYKLNPYASILRKASKANVKK 345
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -3
Query: 538 DVSSSGLSPHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV 368
+ ++S P+S TP S G+ HR S +PT+ SS+M S S
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591
Query: 367 LPTNA*SVLHAN*TRSPIT 311
LP+ + S + N + +T
Sbjct: 592 LPSTSFSNQYPNNSTCSLT 610
>U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical
protein K04G7.1 protein.
Length = 558
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 320 TNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 141
T++ + K+N +K LE+R + + + D E SG +LS P A L++RRR
Sbjct: 353 TSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRR 411
Query: 140 K 138
+
Sbjct: 412 E 412
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 669 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 821
L+ +VA L TKT+RL+ + IRP + + L + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 29.1 bits (62), Expect = 4.3
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Frame = -2
Query: 464 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 285
K+ +NFN+ Q D+TR +K K +R + I R P T N+ L+ +
Sbjct: 138 KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 284 AAVLKRKAILELR------RRKNLKALADAEKSGLK 195
+A K + + R ++ L+A A+A +G K
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLRARAEARAAGKK 230
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 818 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 642
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 641 KD 636
KD
Sbjct: 473 KD 474
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 818 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 642
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 641 KD 636
KD
Sbjct: 473 KD 474
>Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 419 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 264
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 419 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 264
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -2
Query: 539 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 360
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 359 KRVI 348
K +
Sbjct: 2849 KEFV 2852
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -2
Query: 539 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 360
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 359 KRVI 348
K +
Sbjct: 2849 KEFV 2852
>AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 419 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 264
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical
protein C23H3.9a protein.
Length = 503
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 528 DETSKMTSRSQLQEVQLVNIQELHTGDVAEGASQTLILVEDYE--GPLTLDTTTVAHFTL 701
D+T++ T+ E + H+ DV ++ LIL D+ P +L V +
Sbjct: 57 DKTTEATTTETTPEAPTTSEPRSHSRDVCPFFAEPLILANDFAFCRPASLGDCPVGYLCD 116
Query: 702 TSTKTLRLVHLKDIR 746
S K R + KD R
Sbjct: 117 QSVKLGRSICCKDTR 131
>U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical
protein C23H3.9b protein.
Length = 489
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 528 DETSKMTSRSQLQEVQLVNIQELHTGDVAEGASQTLILVEDYE--GPLTLDTTTVAHFTL 701
D+T++ T+ E + H+ DV ++ LIL D+ P +L V +
Sbjct: 53 DKTTEATTTETTPEAPTTSEPRSHSRDVCPFFAEPLILANDFAFCRPASLGDCPVGYLCD 112
Query: 702 TSTKTLRLVHLKDIR 746
S K R + KD R
Sbjct: 113 QSVKLGRSICCKDTR 127
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 27.9 bits (59), Expect = 9.8
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Frame = -2
Query: 464 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 285
K+ +NFN+ Q D+TR +K K +R + I R P T N+ L+
Sbjct: 35 KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 284 AAVLKRKAILELR------RRKNLKALADAEKSGLK 195
+A K + + R ++ L+A A+A +G K
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKK 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,508,193
Number of Sequences: 27780
Number of extensions: 328600
Number of successful extensions: 958
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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