Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k07
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    27   3.2  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   4.2  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   4.2  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   5.5  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   5.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   9.6  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   9.6  

>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = -2

Query: 552 ITWNELEYIG-----GNDSNLIPNPGDSLCDNSLVYSIPVVIPYRSNQ 424
           I W +L +I      G+++N + +   S+ ++++ + IPV+ PY  NQ
Sbjct: 242 IEWWDLPFIKDYNDYGDENNWLIDGPQSIINSAIQHPIPVLPPYAKNQ 289


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 109 YFLLNIICN*NFVFILLKSWI 171
           +FL NII   N++++L K+WI
Sbjct: 30  FFLKNIIVLSNYLYLLYKAWI 50


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 609 EPSYFEVFITKSNWDRRNPIT--WNELEYIGGNDSNLIP 499
           +PSY   +++K  + RRN +   WN+L   G +  N  P
Sbjct: 119 QPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEP 157


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = -2

Query: 633 HFCPTAIHEPSYFEVFITKSNWDRRNPITWNELEYIGGNDSNLIPNPGDSLCDNSLVYSI 454
           H C TA H     E    +    RR P TW  L        + IP   DS+C  S +  +
Sbjct: 127 HIC-TAHHANDQAETIFMRLL--RRKPGTWGGL--CAMKPVSQIPE-SDSICGASNIELL 180

Query: 453 PVVIPYRSNQFV 418
             ++PY  NQ +
Sbjct: 181 RPLLPYYKNQIL 192


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -2

Query: 339 DDECRYAQMAKVVRSQLQKHKLDARIDHNDE 247
           D + RY +  + V + +QK ++ + +DHN++
Sbjct: 354 DMDARYQRHMQTVVNSMQKMRVTSPVDHNEQ 384


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 417 LQIDLTCTVLLRV*NRLDCCHTMNRPDLELNLNRY 521
           L++   CT++  + +RL   H   +P + ++LN Y
Sbjct: 308 LEVTAGCTLISYIADRLQNSHPNIQPPIRVSLNEY 342


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 332 NADTLKWLKWSEANYKNINLM 270
           N  T+K   W  A Y NI LM
Sbjct: 353 NCGTIKTANWRNATYMNITLM 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,555,876
Number of Sequences: 5004
Number of extensions: 79802
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)