Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k07
(811 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 31 1.3
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 31 1.3
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 31 1.3
U80843-16|AAB37958.1| 327|Caenorhabditis elegans Serpentine rec... 29 5.2
Z81099-2|CAB03188.2| 297|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z68221-6|CAB97237.1| 583|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z68217-12|CAA92468.2| 583|Caenorhabditis elegans Hypothetical p... 28 6.9
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF100659-3|AAC68969.2| 334|Caenorhabditis elegans Serpentine re... 28 6.9
AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical ... 28 9.1
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 336 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 431
RL FQ P RNY I + LCAA H + DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 336 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 431
RL FQ P RNY I + LCAA H + DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 336 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 431
RL FQ P RNY I + LCAA H + DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323
>U80843-16|AAB37958.1| 327|Caenorhabditis elegans Serpentine
receptor, class h protein274 protein.
Length = 327
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Frame = +1
Query: 58 NLKTCLKLFVLIVKICY------YFLLNIICN*NFVFILL 159
N++TC+ L +L++ +CY + + N + N NF FI +
Sbjct: 242 NIQTCIPLAILLIPLCYLVISRVFLIYNQVAN-NFCFITI 280
>Z81099-2|CAB03188.2| 297|Caenorhabditis elegans Hypothetical
protein K08F9.3 protein.
Length = 297
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 45 MADYEFEDMFEIVRIDCKDXXXXXAKYNM*LKFCF 149
+AD+EF+D +I+ K AKYN L F F
Sbjct: 253 VADFEFDDYNDILLNSVKPCNNTKAKYNFSLNFDF 287
>Z68221-6|CAB97237.1| 583|Caenorhabditis elegans Hypothetical
protein F58G6.6 protein.
Length = 583
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 342 LDDECRYAQMAKVVRSQLQKHKLDARID 259
L +EC Y Q VR + K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543
>Z68217-12|CAA92468.2| 583|Caenorhabditis elegans Hypothetical
protein F58G6.6 protein.
Length = 583
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 342 LDDECRYAQMAKVVRSQLQKHKLDARID 259
L +EC Y Q VR + K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/100 (25%), Positives = 39/100 (39%)
Frame = -2
Query: 729 FGDKSGMDEPLNNWKPDTLYLNLYQPVYRMNVHFCPTAIHEPSYFEVFITKSNWDRRNPI 550
+G + G ++P P T + PV ++ PT + P+ T +N NP
Sbjct: 446 YGYEGGANKPTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPT 505
Query: 549 TWNELEYIGGNDSNLIPNPGDSLCDNSLVYSIPVVIPYRS 430
T +N I +P S S+V S P + P S
Sbjct: 506 TATPTTVGTSKQTNTI-SPHLSTITGSIVTSTPTMAPQTS 544
>AF100659-3|AAC68969.2| 334|Caenorhabditis elegans Serpentine
receptor, class z protein23 protein.
Length = 334
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 16 KNIF*LTILAWQITNLKTCLKLFVLIVKICY-YFLLNIICN*NFVFILLKSWIKKNAPIP 192
K+I L W+ NLK + ++ + Y F L ++ + F++I + I+K A +P
Sbjct: 171 KDILALIYALWKHVNLKGGIDVYFIYFAFYYTIFFLPVLAS--FLYIPIMISIQKRAHLP 228
Query: 193 SF 198
SF
Sbjct: 229 SF 230
>AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical
protein T22E7.2 protein.
Length = 257
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 627 KNEHSSDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLN 752
K+EH KP + + + +S + R Y +T++C R N
Sbjct: 16 KSEHFVRKPYESEAGRHVITNSFCSICEVRTYRETKHCKRCN 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,641,317
Number of Sequences: 27780
Number of extensions: 447849
Number of successful extensions: 1034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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