Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k06
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788 31 0.97
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 31 0.97
02_01_0642 - 4803464-4805665,4806231-4806320 30 1.3
04_01_0102 + 1060539-1060657,1060752-1060904,1061478-1061728,106... 30 1.7
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738... 29 3.0
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 29 3.9
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 28 5.2
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 5.2
12_01_0429 - 3390096-3390209,3390305-3390547 27 9.1
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 27 9.1
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 27 9.1
02_04_0310 - 21932418-21932531,21932627-21932869 27 9.1
01_05_0418 + 21964094-21964482,21964558-21964681 27 9.1
01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 27 9.1
>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
Length = 1130
Score = 30.7 bits (66), Expect = 0.97
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Frame = -2
Query: 304 NNPQLLHSLAVCALGGEKYAFL---RAQKRSLNRSIKRLGSSDVVFSSDYVPNAMNVLNK 134
N + LH+L + ++ FL RA + + + + L S DV+ SD++P+ + L
Sbjct: 997 NAMKSLHTLHIDSVATHMDPFLLGLRALRILIIKDSEELNSLDVLLESDHLPDTLEQLQL 1056
Query: 133 VK----ETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTERQIA 8
+ ++LP N + + L N Q + + +++TE +I+
Sbjct: 1057 INCNSIKSLPWNMDRVLVLESLQLINCPNMQFLPCLPNNLTELRIS 1102
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 30.7 bits (66), Expect = 0.97
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = -2
Query: 514 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 335
G+I L K + L + E F N+L N + +E R+ET QLA
Sbjct: 74 GIIARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKT----QNNLRDELRKETVQLARENL 129
Query: 334 DIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRS 209
+ Q ++ N ++ + + A ++ A L QK + RS
Sbjct: 130 EKEQRILELRNQCTIIRTTELAA-AQDRLAELERQKDEIMRS 170
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -2
Query: 532 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQ 353
K+++ ++E + +L+ LAE N +++ L + LVQ T L + +
Sbjct: 475 KVESIQIAVQEKDSELSETQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQT 534
Query: 352 LANRM 338
L N++
Sbjct: 535 LQNKL 539
>04_01_0102 +
1060539-1060657,1060752-1060904,1061478-1061728,
1061959-1062141,1062248-1062395,1062679-1062850,
1062971-1063105,1063210-1063356
Length = 435
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Frame = -2
Query: 220 LNRSIKRLGSSDVVFSSDYVPN--AMNVLNKVKETLPRNQYKAKHNK--ITLLQNL---T 62
++ ++ +G FS +P+ A++V++ V L R+Q+KA H + T+ NL
Sbjct: 248 ISDNVPSIGKFITDFSESELPSVPALSVISHVMRGLQRSQFKANHAEWVNTVKPNLGPGL 307
Query: 61 REQLIDAVQSSMTE 20
RE++++A+ S E
Sbjct: 308 RERILEAIASGDNE 321
>10_06_0083 +
10471648-10471806,10473261-10473343,10473384-10473810,
10475806-10475932,10476329-10476471,10476687-10476749,
10476833-10476898,10477047-10477085
Length = 368
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = -2
Query: 232 QKRSLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQ 53
Q +S +RS+ S FSS + L+K++ T ++ H + N +REQ
Sbjct: 287 QTKSFSRSMSCDSHSKASFSSSSRAHTKVDLSKLEMTALWRYWR--HFNLDASPNPSREQ 344
Query: 52 LIDAVQSSMTERQIAR 5
L+DAVQ + R
Sbjct: 345 LVDAVQRHFVSQAAKR 360
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 8 CNLTFRHARLHGIDELFSSQVLQQRDLVVLGFVLVSRQRFFNFVKHV 148
C L + + +G + LFS+ + +L++LGF+ F F+ H+
Sbjct: 138 CILVHQVLKFNGQEALFSALQRVKEELMLLGFISFLLSVFQKFINHI 184
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 SSQVLQQRDLVVLGFVLVSRQRFFN-FVKHVHGVGHIVAAKYHVGRTQAFNATVKTALLR 235
+ +V++Q D V L ++S + FN F+K V + + VG N +
Sbjct: 366 AQEVMRQEDAVELQKKIMSAKFDFNDFLKQSQNVAKMGSMSRVVGMIPGMNKVTPAQIRE 425
Query: 236 AQKRILF 256
A+KR+ F
Sbjct: 426 AEKRLAF 432
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.3 bits (60), Expect = 5.2
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Frame = -2
Query: 502 ELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQ 323
EL L F E+ E E+ H + + L L + E +NR AD+
Sbjct: 502 ELTATLTFEKEARKEVEEQREHLCSENKRVLSNLSDLELSLASLKEEMNDGSNRCADLEC 561
Query: 322 DV-IAKPNNPQLLHSLAVCALGGEKY----AFLRAQKRSLNRSIKRLGSSDVVFSSDYVP 158
++ K N + L LA C E L A +IK+L ++ S++
Sbjct: 562 ELRSTKENMERTLVELASCRNSLETLQNDNLELSANSSFEKEAIKKLEEDNLCLSNEKQG 621
Query: 157 NAMNVLNKVKETLPRNQYKAKH 92
++ L++ KE L + K +H
Sbjct: 622 LLLD-LSETKEELHLSYAKHEH 642
>12_01_0429 - 3390096-3390209,3390305-3390547
Length = 118
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 380 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 285
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 380 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 285
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +3
Query: 240 RNAYFSPPNAHTANECSSWGLLGL--AITSC--AMSAMRLAS 353
R Y +PP++ T+ CS G+LG+ + C A+ A+++A+
Sbjct: 213 RCLYPNPPSSPTSQSCSDNGILGILPGVIGCLQALEAIKVAT 254
>02_04_0310 - 21932418-21932531,21932627-21932869
Length = 118
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 380 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 285
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
>01_05_0418 + 21964094-21964482,21964558-21964681
Length = 170
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 343 GWPAAPFRGAPRLTLC*LAPIRRWRSP 423
GW A FRG PR LC R WR P
Sbjct: 111 GWMA--FRGWPRARLCRWLQSRCWRKP 135
>01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398
Length = 240
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 380 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 285
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 380 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 285
+ GA R G AAGQ H G +S T PT T
Sbjct: 188 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,672,428
Number of Sequences: 37544
Number of extensions: 346100
Number of successful extensions: 1032
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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