Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k06
(620 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 23 1.8
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 1.8
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 1.8
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 23 1.8
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 1.8
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 1.8
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 1.8
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 5.5
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 5.5
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 5.5
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 5.5
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 5.5
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 23.4 bits (48), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 208 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 125
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 208 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 125
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 208 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 125
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.4 bits (48), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 208 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 125
I+R G S +F + + N + +NK+KE
Sbjct: 152 IRRTGEGSKPIFEREEIKNVLTKINKIKE 180
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.4 bits (48), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 208 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 125
I+R G S +F + + N + +NK+KE
Sbjct: 168 IRRTGEGSKPIFEREEIKNVLTKINKIKE 196
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.4 bits (48), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 208 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 125
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 23.4 bits (48), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 208 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 125
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 5.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 325 AQCPPCGWPAAPFRG 369
A PC W A P++G
Sbjct: 296 ANTKPCTWAARPWQG 310
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 5.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 325 AQCPPCGWPAAPFRG 369
A PC W A P++G
Sbjct: 296 ANTKPCTWAARPWQG 310
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 5.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 325 AQCPPCGWPAAPFRG 369
A PC W A P++G
Sbjct: 296 ANTKPCTWAARPWQG 310
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 5.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 478 QTPTFYLTLQSHHNLCPS*R 537
QT Y Q+H LCP+ R
Sbjct: 367 QTSVHYSNGQTHSQLCPTPR 386
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 380 KRGAPRNGAAGQPHGG 333
+RG+P N + G P GG
Sbjct: 35 QRGSPPNPSQGPPPGG 50
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,359
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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