Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11k05
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    32   0.21 
Z82095-3|CAB05028.1|  411|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z73905-4|CAI91175.1|  536|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z70212-10|CAA94169.2|  319|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z50177-8|CAA90548.2|  319|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z79755-3|CAB02108.1|  355|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    27   6.0  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    27   6.0  
AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -2

Query: 515 DWSHYMSIWLIGLRKFIIKDGLKNTEYGR 429
           DW+ Y+  +++G++KF++K+ L+N    R
Sbjct: 430 DWNSYLFDYVMGIKKFLLKENLENLNRSR 458


>Z82095-3|CAB05028.1|  411|Caenorhabditis elegans Hypothetical
           protein ZK849.5 protein.
          Length = 411

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 179 EWQFSTNTPGNCDFKPSPSTLQKSKYF-ILLYFTWCTLNKSILHAHMIETHT 331
           EWQ   +   NCD+ P P    ++ +  +  YF  C   +  L  +  + HT
Sbjct: 221 EWQTKLSLLRNCDYIPIPLAYPQAVFLAVRCYFAVCVFTRQHLDRYDSKMHT 272


>Z73905-4|CAI91175.1|  536|Caenorhabditis elegans Hypothetical
           protein C32C4.7 protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 406 IFNQLCFFLPYSVFLRPSLMMNFLKPINQIDI 501
           + N +C F+ Y VF++P  M+++  P  +ID+
Sbjct: 209 LMNTVCAFI-YQVFMKPPKMISYSHPYYEIDL 239


>Z70212-10|CAA94169.2|  319|Caenorhabditis elegans Hypothetical
           protein R04D3.10 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 212 CDFKPSPSTLQKSKYFILLYFTWCTLNKS-ILHAHMIETHT*ILHSK-CTQKK*RLQKI 382
           CD +  P T+ +++Y ILL FT   +N + ILH       T +   K  T+K+  L KI
Sbjct: 161 CDPERHPITVFQNQYAILLPFTCMFVNLAIILHLRFARNDTYVKFKKFFTKKQSNLSKI 219


>Z50177-8|CAA90548.2|  319|Caenorhabditis elegans Hypothetical
           protein R04D3.10 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 212 CDFKPSPSTLQKSKYFILLYFTWCTLNKS-ILHAHMIETHT*ILHSK-CTQKK*RLQKI 382
           CD +  P T+ +++Y ILL FT   +N + ILH       T +   K  T+K+  L KI
Sbjct: 161 CDPERHPITVFQNQYAILLPFTCMFVNLAIILHLRFARNDTYVKFKKFFTKKQSNLSKI 219


>Z79755-3|CAB02108.1|  355|Caenorhabditis elegans Hypothetical
           protein F43G9.4 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +3

Query: 180 SGNLVPILLVTATSNLHHLHYKKVSTLYYYISHGAL*ISLYCMLI*SKHIHEYC 341
           S +++P +L+T  S   +L Y+    ++Y ++   L +     +  + H+ E C
Sbjct: 263 SSHIIPHILITCYSACRNLDYQTSKEIFYQLNTRVLGLDSSMSIPVTDHLEELC 316


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 225 GLKSQLPGVLVLNCHSYIICYLLSICTWLINKN 127
           GL S L  V  + C   I+C  LS+C +   +N
Sbjct: 892 GLASALDVVSTIGCAISIVCLALSVCVFTFFRN 924


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 225 GLKSQLPGVLVLNCHSYIICYLLSICTWLINKN 127
           GL S L  V  + C   I+C  LS+C +   +N
Sbjct: 892 GLASALDVVSTIGCAISIVCLALSVCVFTFFRN 924


>AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical
           protein C50A2.3 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 368 VIFFVYICCAIFMYVFRSYEHAV 300
           +IF V++C  +   V RSYE  V
Sbjct: 35  IIFIVFLCLCVVCLVVRSYERPV 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,272,772
Number of Sequences: 27780
Number of extensions: 230724
Number of successful extensions: 684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)