Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11k01
(360 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical pr... 161 1e-40
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 31 0.18
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 31 0.18
AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical ... 27 3.9
AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical ... 27 3.9
Z81491-2|CAB04020.1| 181|Caenorhabditis elegans Hypothetical pr... 27 5.2
AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical ... 27 5.2
Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 26 6.9
AF016416-8|AAB65271.1| 388|Caenorhabditis elegans Hypothetical ... 26 9.1
>Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical
protein F39B2.6 protein.
Length = 117
Score = 161 bits (391), Expect = 1e-40
Identities = 73/98 (74%), Positives = 80/98 (81%)
Frame = -3
Query: 328 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 149
MT KRRN GR K RGHV +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y
Sbjct: 1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60
Query: 148 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 35
+ LPKLY KLHYC++CAIHSKVVRNRS++ RR R PP
Sbjct: 61 QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 31.5 bits (68), Expect = 0.18
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -3
Query: 280 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 104
H+K ++C NC+ +K+++ +IR+ E A ++ A +L P K H
Sbjct: 80 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139
Query: 103 SCAIHSKVV-RNRSKKDRRIRTPPKS 29
C K++ + R K ++++ P S
Sbjct: 140 -CKNREKIIEKQRVSKILKVQSLPSS 164
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 31.5 bits (68), Expect = 0.18
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -3
Query: 280 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 104
H+K ++C NC+ +K+++ +IR+ E A ++ A +L P K H
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257
Query: 103 SCAIHSKVV-RNRSKKDRRIRTPPKS 29
C K++ + R K ++++ P S
Sbjct: 258 -CKNREKIIEKQRVSKILKVQSLPSS 282
>AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical
protein Y51A2A.11 protein.
Length = 193
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 337 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 236
+R + K+ +G A G ++ RC N A C P
Sbjct: 83 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116
>AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical
protein Y51A2A.7 protein.
Length = 260
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 337 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 236
+R + K+ +G A G ++ RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183
>Z81491-2|CAB04020.1| 181|Caenorhabditis elegans Hypothetical
protein D1086.2 protein.
Length = 181
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -3
Query: 202 NIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNF 23
N++ +RD N + ++L + L YC+ +++ V NR ++T KS
Sbjct: 82 NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRC-----VKTYLKSKD 136
Query: 22 PRDMSR 5
R++ R
Sbjct: 137 TRELKR 142
>AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical
protein Y105C5B.1 protein.
Length = 311
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 215 LFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSN 337
L D LV W+ R V A + T L A + L HVSN
Sbjct: 2 LMDGLV-WNGNREVSAGRLDTLNTFFLNALELILLIIHVSN 41
>Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical
protein B0001.5 protein.
Length = 553
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 113 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTS 3
++ V + P +S ++ + QKN Y+S E GH TS
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTS 406
>AF016416-8|AAB65271.1| 388|Caenorhabditis elegans Hypothetical
protein F29A7.1 protein.
Length = 388
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 277 VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASV 155
V R N C+ K IK+F ++ I AA R + + V
Sbjct: 129 VSVYRTMNEGNCINASKVIKEFRVKTIRLAACSRSLEEKIV 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,498,505
Number of Sequences: 27780
Number of extensions: 132528
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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