Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j24
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 33 0.35
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 31 1.1
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 31 1.4
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 31 1.4
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 30 1.9
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 3.3
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 29 4.3
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical ... 29 5.7
AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen pro... 29 5.7
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 29 5.7
AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical ... 28 7.6
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 32.7 bits (71), Expect = 0.35
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -1
Query: 642 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLT 469
P+P + T+T +NP TPTT + +I +P P + P S+ AP+A +
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547
Query: 468 PSSLGMAKGVSP 433
P+S A V P
Sbjct: 548 PTSPTTAPTVPP 559
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = -1
Query: 642 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 463
P+P + T+T +NP TPTT TS N ++P+ + + AP +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548
Query: 462 SLGMAKGVSPP 430
+ S P
Sbjct: 549 TTPTHTTASQP 559
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 645 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 475
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666
Query: 474 LTPSSLGMAKGVSPPY 427
S SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 645 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 475
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673
Query: 474 LTPSSLGMAKGVSPPY 427
S SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 659 PYASSHPPLRSRLHQPDHQIPDS 591
P +S HPPL S H +H PD+
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDT 88
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -1
Query: 645 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP-GLKPPLSSEAPSAYLT 469
P S I++TS+ S+ P + T T + + E ++ SS +PS + T
Sbjct: 695 PDSTIITSTSSTSTRPGTSSTATDSPTMDDTSKTSTVTSEGTTLSIESTESSASPSDFTT 754
Query: 468 PSSLGMAKGVSPPYFQVNDESQAS 397
P +G VS Q + S +S
Sbjct: 755 PDFIGFTSSVSRTSEQYSSSSPSS 778
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1
Query: 642 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTP 466
P+P I R PR TP L + I+P+ +F P + PP +P A P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570
Query: 465 SSLGMAKGVSPPYFQVNDESQASRLISR 382
++L S P V ++ ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1
Query: 642 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTP 466
P+P I R PR TP L + I+P+ +F P + PP +P A P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570
Query: 465 SSLGMAKGVSPPYFQVNDESQASRLISR 382
++L S P V ++ ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598
>Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical
protein ZK930.7 protein.
Length = 167
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 648 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLT 541
KPP+P+ T N + P++P T S PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 678 MREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAE 785
+ ++ GV +PP VT+ V+ G+LR+ AE
Sbjct: 233 LTQNNGVKINIPPPHVTNEVISVTGEKDGVLRVAAE 268
>AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical
protein F49F1.1 protein.
Length = 265
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -1
Query: 642 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 481
P+ S ++ + P T TP+LT++++ P+T K + P +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213
>AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen
protein 47 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.7
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Frame = +2
Query: 443 PLAMPSDEGVRYADGASDDNGG-FNPG-ANSF*YGVRGLMEMDVKSGVVGVWNRGFDDRV 616
P P D G G +G PG A G GL D G G G D V
Sbjct: 133 PPGSPGDHGSPGEPGYPGPSGPPGEPGYATIGLIGPPGLAGQDGLDGAPGEPGVGGMDAV 192
Query: 617 DVAEIAGEGGLMHKGETANSNARG*RGG 700
+ + G+ G +GE N ++G RGG
Sbjct: 193 KIVSVDGKIG--RRGEAGNKGSKGSRGG 218
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 651 IKPPSPAISATSTRSSNPRFHTPTTPD-LTSISINPLTP 538
+ SPAI +T+T +++P+ T TP+ +T++ + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304
>AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical
protein Y48C3A.8 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 651 IKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFA-PGLKPPLSSEAP 484
+ PP PA +A + + P + + ++NP TP + P PPLSS P
Sbjct: 166 VPPPPPAATAAVSMNGGGPGSAPGSAHSVNNNVNPGTPGSNPLSNPMSNPPLSSGPP 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,458,573
Number of Sequences: 27780
Number of extensions: 414582
Number of successful extensions: 1525
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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