Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j17
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 212 1e-55
11_01_0155 - 1287003-1287452 212 1e-55
03_06_0097 - 31632238-31632525,31633386-31633769 44 8e-05
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.005
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 29 3.1
12_01_0730 + 6505759-6508806 28 4.0
12_01_0714 + 6223269-6226250 28 4.0
02_05_1340 + 35797923-35799881 28 4.0
11_06_0598 - 25391923-25393197 28 5.3
11_01_0523 - 4109070-4109984,4110532-4110936 28 5.3
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 5.3
06_03_0062 + 16116893-16117029,16117472-16117760 28 5.3
01_06_0990 - 33623085-33623615,33624138-33624278 28 5.3
01_01_0117 + 864966-865686,866860-866883,867006-868063 28 5.3
03_06_0594 + 34950892-34951167,34952241-34952366,34952707-349530... 27 7.1
07_03_0153 - 14481421-14481506,14481933-14482111,14483046-144831... 27 9.3
>12_01_0152 - 1168928-1169377
Length = 149
Score = 212 bits (518), Expect = 1e-55
Identities = 95/143 (66%), Positives = 118/143 (82%)
Frame = -1
Query: 486 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKF 307
R P VQ FGRKKTA AV+YCK G G+++VNG P++L P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 306 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 126 PRRCEPKKFGGPGARARYQKSYR 58
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 212 bits (518), Expect = 1e-55
Identities = 95/143 (66%), Positives = 118/143 (82%)
Frame = -1
Query: 486 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKF 307
R P VQ FGRKKTA AV+YCK G G+++VNG P++L P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 306 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 126 PRRCEPKKFGGPGARARYQKSYR 58
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 44.0 bits (99), Expect = 8e-05
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Frame = -1
Query: 474 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLD---LAEPRLLQYKLQEPILLLGKEKFS 304
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 303 MVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 124
D+ V V GGG Q AI +++AL+ + A+K ++ LL D
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201
Query: 123 RRCEPKKFGGPGARARYQKSYR 58
R E KK G AR R Q S R
Sbjct: 202 RIVERKKAGLKKARKRPQFSKR 223
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 37.9 bits (84), Expect = 0.005
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = -1
Query: 456 GRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 277
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 276 GGGHVAQVYAIRQAISKAL 220
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 382 WTAVYTQHSMTTLAIRNCGGGFLTSEYLD 468
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 352 LQQSGLSQVQWTAVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLTSCLLHSSHF 513
+ GLS +++ +TTLA+ NC + L L + LLHS++F
Sbjct: 417 ISNCGLSGPVPSSIGNLRELTTLALYNCNFSGTVPPQILNLTRLQTLLLHSNNF 470
>12_01_0714 + 6223269-6226250
Length = 993
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 352 LQQSGLSQVQWTAVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLTSCLLHSSHF 513
+ GLS +++ +TTLA+ NC + L L + LLHS++F
Sbjct: 395 ISNCGLSGPVPSSIGNLRELTTLALYNCNFSGTVHPQILNLTRLQTLLLHSNNF 448
>02_05_1340 + 35797923-35799881
Length = 652
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 309 IFPCRAKGLALEVCTAAVW 365
IFP R +GL + +C+ A W
Sbjct: 560 IFPTRVRGLCIAICSLAFW 578
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 77 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 229
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 276 GGGHVAQVYAIRQAISKALIAFY 208
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 494 RQDVSPSRPSKYSDVRKPPPQLRIAS 417
R+ S S P K SD R PPP+ R S
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTS 58
>06_03_0062 + 16116893-16117029,16117472-16117760
Length = 141
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 381 MDGRLHAAFHDHA--CNTQLRWRFSYVRILGRPGW 479
+D RL A +HA N + RWR LG+ GW
Sbjct: 26 LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60
>01_06_0990 - 33623085-33623615,33624138-33624278
Length = 223
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -1
Query: 444 TATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGH 265
T AV++ G L +G A PR + + I + ++ +VD R GGGH
Sbjct: 116 TQHAVSWADDGEWELPESGEE-GTAPPRSGAHMTEVTIRITKRQLQELVDKRAAAAGGGH 174
Query: 264 VAQVYAIRQAISKALIA 214
VY + + L+A
Sbjct: 175 GYHVYRKSRRSAAELLA 191
>01_01_0117 + 864966-865686,866860-866883,867006-868063
Length = 600
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 367 LSQVQWTAVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLTSCL 495
+S Q TAVY H++ ++ C + + + + G TSCL
Sbjct: 115 ISVNQSTAVYRPHTLKAASLVGCSRDSIDTNQYNSIVGPTSCL 157
>03_06_0594 +
34950892-34951167,34952241-34952366,34952707-34953018,
34954005-34954133,34954259-34954660
Length = 414
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 300 PWRIFPCRAKGLALEVCTAAVWAQPSPMDGRLHAAFHD 413
P +F RA AL + W S DG++HA HD
Sbjct: 76 PGPVFALRADMDALPIQEMVEWEFKSLEDGKMHACGHD 113
>07_03_0153 -
14481421-14481506,14481933-14482111,14483046-14483130,
14483301-14483499,14484222-14484292,14484380-14484486,
14484571-14484703,14484870-14485020,14485147-14485249,
14485330-14485438,14485587-14485746,14486293-14486394,
14486892-14487009,14487596-14487750,14487850-14487948,
14488078-14488167
Length = 648
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -3
Query: 334 NPFARQGKILHGRHQSDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 197
NP +IL G SD +G C R P + G+D ++ C
Sbjct: 602 NPLIVPLEILRGHSSSDGRGVLDCKFHPRQPWLFTAGADSVVRLYC 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,625,859
Number of Sequences: 37544
Number of extensions: 362153
Number of successful extensions: 1122
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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