Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j17
(528 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 257 2e-68
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 257 2e-68
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 257 2e-68
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 257 2e-68
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 135 1e-31
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 109 8e-24
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 54 3e-07
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 54 3e-07
BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein ... 31 1.9
BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein ... 31 1.9
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 31 2.5
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 2.5
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.5
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.5
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 2.5
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 2.5
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 2.5
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 2.5
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.5
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 31 2.5
AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophil... 31 3.3
AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens ... 31 3.3
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 5.8
BC009071-1|AAH09071.1| 246|Homo sapiens protein F25965 protein. 30 5.8
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 5.8
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 5.8
Y08201-1|CAA69383.1| 331|Homo sapiens rab geranylgeranyl transf... 29 7.6
X98001-1|CAA66638.1| 331|Homo sapiens geranylgeranyl transferas... 29 7.6
U49245-1|AAA91473.1| 331|Homo sapiens geranylgeranyl transferas... 29 7.6
CR456941-1|CAG33222.1| 331|Homo sapiens RABGGTB protein. 29 7.6
BC020790-1|AAH20790.1| 331|Homo sapiens Rab geranylgeranyltrans... 29 7.6
AL357314-5|CAI22393.1| 331|Homo sapiens Rab geranylgeranyltrans... 29 7.6
AB209023-1|BAD92260.1| 320|Homo sapiens Rab geranylgeranyltrans... 29 7.6
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 257 bits (630), Expect = 2e-68
Identities = 117/141 (82%), Positives = 135/141 (95%)
Frame = -1
Query: 480 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSM 301
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL++ EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 300 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 121
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 120 RCEPKKFGGPGARARYQKSYR 58
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 257 bits (630), Expect = 2e-68
Identities = 117/141 (82%), Positives = 135/141 (95%)
Frame = -1
Query: 480 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSM 301
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL++ EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 300 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 121
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 120 RCEPKKFGGPGARARYQKSYR 58
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 257 bits (630), Expect = 2e-68
Identities = 117/141 (82%), Positives = 135/141 (95%)
Frame = -1
Query: 480 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSM 301
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL++ EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 300 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 121
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 120 RCEPKKFGGPGARARYQKSYR 58
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 257 bits (630), Expect = 2e-68
Identities = 117/141 (82%), Positives = 135/141 (95%)
Frame = -1
Query: 480 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSM 301
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL++ EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 300 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 121
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 120 RCEPKKFGGPGARARYQKSYR 58
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 135 bits (326), Expect = 1e-31
Identities = 60/83 (72%), Positives = 74/83 (89%)
Frame = -1
Query: 480 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSM 301
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL++ EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 300 VDIRVTVKGGGHVAQVYAIRQAI 232
VDIRV VKGGGHVAQ+Y Q +
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQEL 88
Score = 30.7 bits (66), Expect = 3.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 215 PSTRNM*TKPQRRKSKTS*YNTIGVCW 135
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 109 bits (261), Expect = 8e-24
Identities = 57/108 (52%), Positives = 74/108 (68%)
Frame = -1
Query: 477 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSMV 298
+Q+VQ+F K+ A AV C+ G G +R+N PL++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 297 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 154
DI V VKG GHV Q+YA+ Q ISKAL+ Y KYVDEAS +EIKD L +
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 54.0 bits (124), Expect = 3e-07
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = -1
Query: 456 GRKKTATAVAYC-KRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 280
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 279 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 100
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 333 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 382
Query: 99 GGPGARARY 73
G GAR ++
Sbjct: 383 GQEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 54.0 bits (124), Expect = 3e-07
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = -1
Query: 456 GRKKTATAVAYC-KRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 280
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 279 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 100
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 239 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 288
Query: 99 GGPGARARY 73
G GAR ++
Sbjct: 289 GQEGARRKF 297
>BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -1
Query: 372 AEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 193
++P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 41 SKPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -1
Query: 372 AEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 193
++P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 41 SKPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 258 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 127
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 61 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104
>AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophila)
homolog-associated protein 3 protein.
Length = 979
Score = 30.7 bits (66), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 301 GRHQSDSQGWWSCSTSLRYPTSYFKG 224
GRHQ+ S GWWS +L + + G
Sbjct: 251 GRHQAKSTGWWSSDDNLDSDSGFLAG 276
>AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens
cDNA FLJ44066 fis, clone TESTI4036909, weakly similar
to Regulator of nonsense transcripts 1. ).
Length = 926
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/80 (22%), Positives = 35/80 (43%)
Frame = -1
Query: 402 LRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKA 223
L P ++ R+ + K P KF ++ + T+K + QV+ + + + A
Sbjct: 385 LLTTSSPTIVSNKRVSKRKFIPPAFTNVSTKFELLSLGATLKLASELIQVHKLNKDQATA 444
Query: 222 LIAFYQKYVDEASKKEIKDI 163
LI Q S +E+K++
Sbjct: 445 LIQIAQMMASHESIEEVKEL 464
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 5.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 189 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 106
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>BC009071-1|AAH09071.1| 246|Homo sapiens protein F25965 protein.
Length = 246
Score = 29.9 bits (64), Expect = 5.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 472 LDGLTSCLLHSSHFDRERL 528
LD + CLL SH DRERL
Sbjct: 22 LDAVLQCLLEKSHMDRERL 40
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 5.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 189 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 106
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 5.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 189 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 106
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>Y08201-1|CAA69383.1| 331|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 331
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 289 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 197
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>X98001-1|CAA66638.1| 331|Homo sapiens geranylgeranyl transferase
II protein.
Length = 331
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 289 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 197
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>U49245-1|AAA91473.1| 331|Homo sapiens geranylgeranyl transferase
type II beta-subunit protein.
Length = 331
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 289 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 197
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>CR456941-1|CAG33222.1| 331|Homo sapiens RABGGTB protein.
Length = 331
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 289 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 197
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>BC020790-1|AAH20790.1| 331|Homo sapiens Rab
geranylgeranyltransferase, beta subunit protein.
Length = 331
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 289 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 197
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>AL357314-5|CAI22393.1| 331|Homo sapiens Rab
geranylgeranyltransferase, beta subunit protein.
Length = 331
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 289 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 197
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>AB209023-1|BAD92260.1| 320|Homo sapiens Rab
geranylgeranyltransferase, beta subunit variant protein.
Length = 320
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 289 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 197
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,798,780
Number of Sequences: 237096
Number of extensions: 1985647
Number of successful extensions: 5095
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 4902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5091
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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