Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j13
(245 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 28 0.20
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 26 0.60
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 26 0.80
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 1.1
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 1.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 1.8
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 1.8
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 1.8
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 24 3.2
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 23 4.3
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 5.6
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 23 5.6
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 23 5.6
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 23 7.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 23 7.4
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 23 7.4
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 23 7.4
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 23 7.4
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 22 9.8
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 22 9.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 22 9.8
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 22 9.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 22 9.8
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 22 9.8
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 22 9.8
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 0.20
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1
Query: 161 AIQCINEKLYDKHYKIRKIAKRVI 90
A++CIN+K +D+H KI+K+ V+
Sbjct: 57 ALKCINKKKHDEH-KIKKLRNEVL 79
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 0.60
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 36 LQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 143
L F LF + T+HV F + F F+ +FF
Sbjct: 246 LAAFYRGLFPSLFGTLHVGIQFPLYEYFKSFLDDFF 281
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 0.80
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 3 YILITIIHVFILQYFLYNLF 62
Y+L+ II + L YF+YN F
Sbjct: 6 YVLLVIILILSLCYFIYNNF 25
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 1.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 188 DGVHPNPLLAIQCINEKLYD 129
D ++PN L ++ INEK +D
Sbjct: 5 DAINPNNLKILEVINEKCFD 24
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +3
Query: 18 IIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVI 191
+I + I ++Y F YI + IH + +F F+ F + +W H+++
Sbjct: 281 VISLIIAPLWIYFTFKYITTCIHANIDIVHFYLETPFLAGIFSSIF---FWVWCHSLL 335
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 57 LFNYIMSTIHVDYTF 101
LFNY++S IH D ++
Sbjct: 527 LFNYVLSLIHFDMSY 541
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 236 FRKRKMRFEDDMEVLYDGVHPNPL 165
FRKR++ +D ++L D VH N +
Sbjct: 119 FRKRELFTLEDEKILIDHVHKNDI 142
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +3
Query: 45 FLYNLFNYIMSTIHVDYTFSYFSNFVMFI 131
F+ + N+ +I+ +Y+F F+N +M +
Sbjct: 437 FILDSQNFFFESINTEYSFIIFTNLLMHL 465
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 3.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 27 VFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNT 152
V+ILQ FL++LF M + Y + ++ + + F+ T
Sbjct: 69 VYILQIFLFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIAT 110
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 23.4 bits (48), Expect = 4.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 33 ILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVE 137
I QYF+ Y S +H+ Y + VM++V+
Sbjct: 242 IRQYFIPKEGTYTFSNMHIRYVSANPKTPVMYMVD 276
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 23.0 bits (47), Expect = 5.6
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 90 DYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVIEHF-HVVFKAHFSLAKMS 242
D F +F +F E V++L G +V+ ++ F ++ +FS+ KMS
Sbjct: 292 DTYFVFFMAIKIFFSEPIVSSLGIYNG-FVNGLLYFFLQAIWPVYFSIYKMS 342
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 108 FSNFVMFIVEFFVNTLNCQQGIWVHTV 188
F N ++ ++ FF+ TLN W+H++
Sbjct: 176 FLNLLLSLMFFFL-TLNNTDKTWIHSI 201
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 194 LYDGVHPNP 168
LYDGV PNP
Sbjct: 107 LYDGVQPNP 115
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 66 YIMSTIHVDYTFSYFSNFVMFIV 134
Y+ STI+ +F+YF + F V
Sbjct: 352 YLQSTIYEKSSFAYFGLAIKFAV 374
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 102 SYFSNFVMFIVEFFVNTLNC 161
SYF N +V F +N L C
Sbjct: 204 SYFLNIGTIVVTFQLNVLRC 223
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 185 RHRALPCRLQSAFF 226
R RALPC+ +FF
Sbjct: 2 RDRALPCKCMPSFF 15
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 206 DMEVLYDGVHPNPLLAIQCINEKLYDKHYKIRKIA 102
+ E+L + P L++ ++ L+++H K +KIA
Sbjct: 34 ETEILIYQIRPLTLISKITKSQNLFERHGKNKKIA 68
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = -1
Query: 107 IAKRVIDVDCTHNVVKEVIQEV 42
+A +V+D+D T + ++ + QE+
Sbjct: 32 VALKVVDLDATKDQIETLTQEI 53
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 54 NLFNYIMSTIHVDYTFSYFSNFVMFIVEFFV 146
NL +IM+ HV + ++++ F FFV
Sbjct: 145 NLHLHIMTLDHVSPSLKNSAHYISFTSPFFV 175
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 99 FSYFSNFVMFIVEFFVNTL 155
F+ FS +FI+ FF++ L
Sbjct: 224 FTLFSGIGIFIITFFISLL 242
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 22.2 bits (45), Expect = 9.8
Identities = 6/18 (33%), Positives = 14/18 (77%)
Frame = -1
Query: 230 KRKMRFEDDMEVLYDGVH 177
++++ E+++EVLYD +
Sbjct: 304 RKRLAIEEELEVLYDAYY 321
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 22.2 bits (45), Expect = 9.8
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 6 ILITIIHVFILQYFLYNLFN-YIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVH 182
+L + H+ FL N YI + + FSY + F + F++T + VH
Sbjct: 154 LLFGMAHIHHTYEFLLAYPNAYIAAALQTVVQFSYTTVFGWYTTHLFLSTHSLFPSFLVH 213
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/46 (19%), Positives = 21/46 (45%)
Frame = -1
Query: 179 HPNPLLAIQCINEKLYDKHYKIRKIAKRVIDVDCTHNVVKEVIQEV 42
H + + + C+ + +Y + + I ++ID T NV + +
Sbjct: 1180 HEDLVWVVPCVGDVVYPEAEEASPIEVKIIDQTYTINVYHHYLDNI 1225
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1
Query: 176 PNPLLAIQCIN 144
PNPLLA++ +N
Sbjct: 581 PNPLLAVEALN 591
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 63 NYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLN 158
N+I S + YT+ + + V+ F N N
Sbjct: 470 NFINSDVPKSYTYDGYDRYGCLAVDSFYNIYN 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,120
Number of Sequences: 5004
Number of extensions: 16025
Number of successful extensions: 56
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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