Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j13
(245 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0374 + 4914864-4914947,4915094-4915217,4921146-4921471,492... 28 0.91
09_02_0051 - 3606453-3606473,3606562-3606957,3608250-3608419,360... 27 2.1
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 27 2.1
06_01_1166 + 9931955-9933406 26 3.7
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 26 4.9
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 25 6.4
07_03_1240 + 25095472-25095942,25096021-25096314,25096563-250973... 25 8.5
06_01_1168 - 9949128-9950621 25 8.5
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 25 8.5
02_04_0027 - 19014033-19014127,19014219-19014315,19014560-190146... 25 8.5
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771... 25 8.5
>04_01_0374 +
4914864-4914947,4915094-4915217,4921146-4921471,
4921527-4921658,4921824-4922362,4922445-4922597,
4922695-4922995
Length = 552
Score = 28.3 bits (60), Expect = 0.91
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -1
Query: 218 RFEDDM--EVLYDGVHPNPLLAIQCINE-KLYDKHYKIRKIAKRVIDVDCTHNVVKEVIQ 48
R EDD+ + L HP I C N Y Y+ RK++K D + EVIQ
Sbjct: 47 RREDDILTKALGTKGHPGRTRGIGCYNGLPQYSSQYRKRKVSKEERDACLKAELKVEVIQ 106
Query: 47 EV 42
E+
Sbjct: 107 EL 108
>09_02_0051 -
3606453-3606473,3606562-3606957,3608250-3608419,
3609654-3610707
Length = 546
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 161 AIQCINEKLYDKHYKIRKIAKRVIDVD 81
AI+CI E D+ Y I + KRVI ++
Sbjct: 422 AIKCIEEHKLDEKYPIDLLQKRVIQLE 448
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 57 LFNYIMSTIHVDYTFSYFSNFVMFIVEF-FVNTLNCQQGIWVHTVIEHFHV 206
L NY ++Y F + + F EF F + + +W H EHFH+
Sbjct: 561 LHNYFRKNDCLNYFFCFRWVLIQFKREFSFDQIMLLWEVLWTHYWSEHFHL 611
>06_01_1166 + 9931955-9933406
Length = 483
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 122 NVYRRVFR*YIELPTRDLGAHRHRAL 199
N +RR+ Y+E P DLG R RA+
Sbjct: 228 NTFRRLEGQYLERPLADLGFRRVRAI 253
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 45 FLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 143
F FN I I V YT NF +++EFF
Sbjct: 473 FFGRSFNRIYPLIMVVYTLLVAGNFFGYVLEFF 505
>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 48 LYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVN 149
+ N + +MST+H +Y S+F ++ + F+N
Sbjct: 1250 IVNFLDLLMSTLHANYVPSFFIRKLITQLFSFIN 1283
>07_03_1240 +
25095472-25095942,25096021-25096314,25096563-25097383,
25097466-25097636,25097716-25098016
Length = 685
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 134 YDKHYKIRKIAKRVIDVDCTHNVVKEVIQEV 42
Y Y+ RK++K DV + EVIQE+
Sbjct: 211 YSSQYRKRKVSKEERDVRLKAELKVEVIQEL 241
>06_01_1168 - 9949128-9950621
Length = 497
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 122 NVYRRVFR*YIELPTRDLGAHRHRAL 199
N ++R+ Y+E P DLG R RA+
Sbjct: 234 NTFQRLEGRYLERPVADLGFRRVRAI 259
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 239 HFRKRKM-RFEDDMEVLYDGVHPNPLLAIQCI 147
HF + K R + D V VHP IQC+
Sbjct: 47 HFMRYKWYRIQSDRRVAVCNVHPTEQATIQCL 78
>02_04_0027 -
19014033-19014127,19014219-19014315,19014560-19014673,
19014759-19014923,19015169-19015306,19015402-19015478,
19015572-19015686,19015756-19015861,19016182-19016243,
19016407-19016472,19016628-19016810,19017359-19017415,
19017848-19017896,19017983-19018131,19019203-19019250,
19020061-19020201
Length = 553
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 173 NPLLAIQCINEKLYDKHYKIRKIAKRVIDVD 81
NPL+ I+C N KH I KI K V +++
Sbjct: 233 NPLI-IECFNFSSNGKHDLIGKIVKSVAELE 262
>01_01_0977 -
7717808-7717837,7718227-7718327,7718449-7718548,
7718706-7718822,7718913-7718990,7719980-7720058,
7720184-7720249,7720373-7720441,7720890-7721188
Length = 312
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 30 FILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIV 134
F + YFL +FN + I+ + + YF + + +V
Sbjct: 120 FFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLV 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,345,194
Number of Sequences: 37544
Number of extensions: 85151
Number of successful extensions: 301
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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