Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j13
(245 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-P... 31 0.16
AE014297-1358|AAF54682.3| 895|Drosophila melanogaster CG6834-PA... 30 0.37
AY113442-1|AAM29447.1| 803|Drosophila melanogaster RE28849p pro... 30 0.49
AY071446-1|AAL49068.1| 803|Drosophila melanogaster RE52979p pro... 30 0.49
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P... 28 1.5
AY089288-1|AAL90026.1| 598|Drosophila melanogaster AT08391p pro... 28 2.0
AE014296-3315|AAF49042.1| 598|Drosophila melanogaster CG17122-P... 28 2.0
AY070944-1|AAL48566.1| 891|Drosophila melanogaster RE03989p pro... 27 4.6
AE014297-1357|AAF54681.1| 891|Drosophila melanogaster CG6830-PA... 27 4.6
U42204-1|AAB50956.1| 855|Drosophila melanogaster putative potas... 26 8.0
U36925-1|AAB50936.1| 855|Drosophila melanogaster seizure potass... 26 8.0
AY058350-1|AAL13579.1| 855|Drosophila melanogaster GH12235p pro... 26 8.0
AE013599-3790|AAF47148.1| 855|Drosophila melanogaster CG3182-PB... 26 8.0
AE013599-3789|AAM68296.1| 855|Drosophila melanogaster CG3182-PA... 26 8.0
>AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-PA
protein.
Length = 3539
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 179 HPNPLLAIQCINEKLYDKHYKIRKIAKRVIDVDCTHNVVKEVIQE 45
H +P A+ E++ K K + +++R+I +D T + E IQE
Sbjct: 1193 HQSPAAAVVAEKERVQPKTPKRKAVSRRIIKMDATPETLAEPIQE 1237
>AE014297-1358|AAF54682.3| 895|Drosophila melanogaster CG6834-PA
protein.
Length = 895
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +3
Query: 54 NLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVIEHFHVVFKAHFSLA 233
+LF I++++H+DY YF F+ E L+ + H++ H S A
Sbjct: 349 DLFYLILTSVHIDYKLDYFEYFIRHYHEQLTQHLDLLGFTGKQPSLRELHMLMYKHGSWA 408
>AY113442-1|AAM29447.1| 803|Drosophila melanogaster RE28849p
protein.
Length = 803
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +3
Query: 54 NLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVIEHFHVVFKAHFSLA 233
+LF I++++H+DY YF F+ E L + H++ H S A
Sbjct: 257 DLFYLILTSVHIDYKLDYFEYFIRHYHEQLTQHLGLLGFTGKQPSLRELHMLMYKHGSWA 316
>AY071446-1|AAL49068.1| 803|Drosophila melanogaster RE52979p
protein.
Length = 803
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +3
Query: 54 NLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVIEHFHVVFKAHFSLA 233
+LF I++++H+DY YF F+ E L + H++ H S A
Sbjct: 257 DLFYLILTSVHIDYKLDYFEYFIRHYHEQLTQHLGLLGFTGKQPSLRELHMLMYKHGSWA 316
>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
isoform D protein.
Length = 11707
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 119 KIRKIAKRVIDVDCTHNVVKEVIQE 45
K RKI KRV+ +D ++ +EV++E
Sbjct: 8252 KTRKIIKRVVIIDGKEHITEEVVEE 8276
>AY089288-1|AAL90026.1| 598|Drosophila melanogaster AT08391p
protein.
Length = 598
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 RHFRKRKMRFEDDMEVL-YDGVHPNPLLAIQCINEKLYDKHYKIRKIAKR--VIDVD 81
R++ K K ++ +EVL Y + + L A +C N K D K+R +AKR ++D+D
Sbjct: 274 RNYEKLKAKY---VEVLRYKKAYESLLQAEKCENVKQKDAAGKLRTLAKRMEILDLD 327
>AE014296-3315|AAF49042.1| 598|Drosophila melanogaster CG17122-PA
protein.
Length = 598
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 RHFRKRKMRFEDDMEVL-YDGVHPNPLLAIQCINEKLYDKHYKIRKIAKR--VIDVD 81
R++ K K ++ +EVL Y + + L A +C N K D K+R +AKR ++D+D
Sbjct: 274 RNYEKLKAKY---VEVLRYKKAYESLLQAEKCENVKQKDAAGKLRTLAKRMEILDLD 327
>AY070944-1|AAL48566.1| 891|Drosophila melanogaster RE03989p
protein.
Length = 891
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 54 NLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTL 155
+L +I+S++ +DY S+F F+ E V L
Sbjct: 334 DLLYFIISSVQIDYKLSHFDFFIRHYQEALVKHL 367
>AE014297-1357|AAF54681.1| 891|Drosophila melanogaster CG6830-PA
protein.
Length = 891
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 54 NLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTL 155
+L +I+S++ +DY S+F F+ E V L
Sbjct: 334 DLLYFIISSVQIDYKLSHFDFFIRHYQEALVKHL 367
>U42204-1|AAB50956.1| 855|Drosophila melanogaster putative
potassium channel subunithomolog protein.
Length = 855
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = -1
Query: 158 IQCINEKLYDKHYKIRKIAKRVIDVDCTHNVVKE 57
I+C +KLY K+Y++ A+R D+ C+++ +++
Sbjct: 196 IKCDKKKLYIKNYQVS--ARRECDLLCSYDPLRK 227
>U36925-1|AAB50936.1| 855|Drosophila melanogaster seizure potassium
channel protein.
Length = 855
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = -1
Query: 158 IQCINEKLYDKHYKIRKIAKRVIDVDCTHNVVKE 57
I+C +KLY K+Y++ A+R D+ C+++ +++
Sbjct: 196 IKCDKKKLYIKNYQVS--ARRECDLLCSYDPLRK 227
>AY058350-1|AAL13579.1| 855|Drosophila melanogaster GH12235p
protein.
Length = 855
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = -1
Query: 158 IQCINEKLYDKHYKIRKIAKRVIDVDCTHNVVKE 57
I+C +KLY K+Y++ A+R D+ C+++ +++
Sbjct: 196 IKCDKKKLYIKNYQVS--ARRECDLLCSYDPLRK 227
>AE013599-3790|AAF47148.1| 855|Drosophila melanogaster CG3182-PB,
isoform B protein.
Length = 855
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = -1
Query: 158 IQCINEKLYDKHYKIRKIAKRVIDVDCTHNVVKE 57
I+C +KLY K+Y++ A+R D+ C+++ +++
Sbjct: 196 IKCDKKKLYIKNYQVS--ARRECDLLCSYDPLRK 227
>AE013599-3789|AAM68296.1| 855|Drosophila melanogaster CG3182-PA,
isoform A protein.
Length = 855
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = -1
Query: 158 IQCINEKLYDKHYKIRKIAKRVIDVDCTHNVVKE 57
I+C +KLY K+Y++ A+R D+ C+++ +++
Sbjct: 196 IKCDKKKLYIKNYQVS--ARRECDLLCSYDPLRK 227
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,360,655
Number of Sequences: 53049
Number of extensions: 158172
Number of successful extensions: 469
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 24,988,368
effective HSP length: 61
effective length of database: 21,752,379
effective search space used: 435047580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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