Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j13
(245 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58749-2|AAK18876.1| 355|Caenorhabditis elegans Hypothetical pr... 33 0.036
AL023835-6|CAA19483.1| 144|Caenorhabditis elegans Hypothetical ... 30 0.25
AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical... 29 0.44
U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 27 1.3
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 27 1.3
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 27 1.3
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 27 1.3
AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical ... 27 1.8
AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical ... 27 2.3
Z78200-6|CAB01585.2| 524|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 26 3.1
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 26 3.1
U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine rece... 26 3.1
AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical ... 26 3.1
Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z82261-5|CAH60756.1| 304|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF016419-3|AAG24048.1| 529|Caenorhabditis elegans Hypothetical ... 26 4.1
Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical pr... 25 5.4
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 25 5.4
U21323-12|AAA62554.2| 354|Caenorhabditis elegans Hypothetical p... 25 5.4
AC024798-3|AAP86612.1| 361|Caenorhabditis elegans Hypothetical ... 25 5.4
AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical ... 25 5.4
Z81533-13|CAB04336.2| 323|Caenorhabditis elegans Hypothetical p... 25 7.1
AC006629-10|ABC48257.1| 312|Caenorhabditis elegans Hypothetical... 25 7.1
Z82086-5|CAB04992.2| 325|Caenorhabditis elegans Hypothetical pr... 25 9.4
U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone... 25 9.4
U50300-5|AAC48103.2| 337|Caenorhabditis elegans Serpentine rece... 25 9.4
AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear recep... 25 9.4
AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear recep... 25 9.4
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 25 9.4
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 25 9.4
AF125954-1|AAK68174.1| 340|Caenorhabditis elegans Serpentine re... 25 9.4
AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical ... 25 9.4
AC006769-2|AAF60583.2| 340|Caenorhabditis elegans Hypothetical ... 25 9.4
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 25 9.4
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 25 9.4
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 25 9.4
>U58749-2|AAK18876.1| 355|Caenorhabditis elegans Hypothetical
protein B0496.5 protein.
Length = 355
Score = 32.7 bits (71), Expect = 0.036
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 3 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVH 182
+++ +HV +L F + I+ + +SYF N+ +FI+ F +T QG WV
Sbjct: 88 FLITDYLHVLLLAAFAIDRLIQIIFPVSYGKFYSYFINWKLFILLIFASTGLSVQG-WVF 146
Query: 183 TVIEHFH 203
+ F+
Sbjct: 147 PLDSRFN 153
>AL023835-6|CAA19483.1| 144|Caenorhabditis elegans Hypothetical
protein Y37A1B.6 protein.
Length = 144
Score = 29.9 bits (64), Expect = 0.25
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 24 HVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVN---TLNCQQGIWVHTVIE 194
+ F+L YF N+FN + IH TF ++F F++E + + N + ++ H+V
Sbjct: 23 YCFMLHYFGKNMFNSNFADIH--NTFLMVASFEQFVLEGYYSIDRASNFPENLYFHSVTG 80
Query: 195 HFHVVFKAH 221
+V K H
Sbjct: 81 --KIVHKPH 87
>AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical
protein Y75B8A.34 protein.
Length = 344
Score = 29.1 bits (62), Expect = 0.44
Identities = 11/44 (25%), Positives = 27/44 (61%)
Frame = +3
Query: 3 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIV 134
YI+ ++ FI+ + F +I ++++DY+ ++FS + F++
Sbjct: 98 YIISSLASAFIIDSRTLSGFYFIQPSLYLDYSSNFFSVAITFLM 141
>U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical
protein D2096.5 protein.
Length = 137
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 21 IHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTL 155
+HV +L F++ LF+ + + + F+ F + + V+FFV L
Sbjct: 4 LHVSLLSVFIFLLFSSEVEALVTTFHFNGFLSCGLSTVDFFVQKL 48
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 3 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 101
+ ++ ++ VFI +YN N + IH D F
Sbjct: 20 FSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 3 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 101
+ ++ ++ VFI +YN N + IH D F
Sbjct: 20 FSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 3 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 101
+ ++ ++ VFI +YN N + IH D F
Sbjct: 20 FSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 3 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 101
+ ++ ++ VFI +YN N + IH D F
Sbjct: 20 FSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical
protein F07G11.4 protein.
Length = 499
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 164 LAIQCINEKLYDKHYKIRK 108
L ++C NEK YD +Y RK
Sbjct: 425 LVLKCYNEKYYDLYYSNRK 443
>AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical
protein T21G5.2 protein.
Length = 109
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 3 YILITIIHVFILQYFLYNLFNYI-MSTIHVDYTFSYFSNF 119
+++ T IH+F L+N F +I +S V +FS F F
Sbjct: 36 FVIFTYIHIFSYLCVLFNYFLFIDLSISTVIVSFSRFIKF 75
>Z78200-6|CAB01585.2| 524|Caenorhabditis elegans Hypothetical
protein T04H1.8 protein.
Length = 524
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 54 NLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVIEHFHVVFKAHF 224
N N ++STI Y+ + NF F + NTL + V F VF HF
Sbjct: 452 NAENLLISTIEATYSTEFPPNFSKFPKNYHPNTLVRLIDSSIALVFMLFIFVFVNHF 508
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 245 ERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEKLYDKHYKIRKIAKRVI 90
E F+ +++ F D + LYDG PL+A N+KL + + + K++K +I
Sbjct: 649 ENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKKLTYETF-MEKMSKYLI 700
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 245 ERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEKLYDKHYKIRKIAKRVI 90
E F+ +++ F D + LYDG PL+A N+KL + + + K++K +I
Sbjct: 649 ENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKKLTYETF-MEKMSKYLI 700
>U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine
receptor, class w protein117 protein.
Length = 372
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 6 ILITIIHVFIL--QYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNT 152
ILI I+HVFIL + + N +M+ + + F F+NF + F NT
Sbjct: 50 ILINIVHVFILTRKPMRTSSINILMAAVAL---FDIFTNFQQIEIIFERNT 97
>AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical
protein C23H5.7 protein.
Length = 644
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 12 ITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNF 119
I + H YFL++L+ I ++ FSY+ F
Sbjct: 183 IVLFHWNACLYFLFSLYEGITEESQTEFGFSYYKVF 218
>Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical
protein F44E5.2 protein.
Length = 820
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 15 TIIHVFILQYFLYNLFNYIMSTIHVD 92
T+ H + L+ LFN+I S+ H+D
Sbjct: 314 TLKHDVFMSQCLHALFNFIKSSYHID 339
>Z82261-5|CAH60756.1| 304|Caenorhabditis elegans Hypothetical
protein C35D6.9a protein.
Length = 304
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +3
Query: 27 VFILQYFLYNLFNYIMSTIHVDYTFS 104
++I+ +F +N+F+ + + +HV FS
Sbjct: 172 IYIVIFFTFNIFSILSAILHVPMYFS 197
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 18 IIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFV 122
IIHV Q FL LFN + H D +++F + +
Sbjct: 1424 IIHV---QKFLIYLFNQVDEICHCDLVYTFFHSIL 1455
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 18 IIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFV 122
IIHV Q FL LFN + H D +++F + +
Sbjct: 1424 IIHV---QKFLIYLFNQVDEICHCDLVYTFFHSIL 1455
>AF016419-3|AAG24048.1| 529|Caenorhabditis elegans Hypothetical
protein F07G11.3 protein.
Length = 529
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 164 LAIQCINEKLYDKHYKIRK 108
L ++C NEK YD Y RK
Sbjct: 455 LVLKCYNEKYYDLFYNNRK 473
>Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical
protein K09A9.4 protein.
Length = 716
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 83 DCTHNVVKEVIQEVL*NKNMYNSY 12
+C+H++ K IQ L +NMY+ +
Sbjct: 221 NCSHDIPKTAIQMALDLRNMYSDF 244
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 226 EKCALKTTWKCSMTVCTQIPCWQFNVLTKNSTI-NITKLEK 107
E+C C +C QI WQF TKN + ++T+ K
Sbjct: 479 EQCRHHLLTVCPAQLCQQIATWQF---TKNPVVGHLTRAPK 516
>U21323-12|AAA62554.2| 354|Caenorhabditis elegans Hypothetical
protein C45G9.11 protein.
Length = 354
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 57 LFNYIMSTIHVDYTFSYFSNFVMFIVEFF 143
L N+ + +H+ Y F FS F+ F F
Sbjct: 269 LVNFDKAVLHIHYIFCIFSFFINFFFLIF 297
>AC024798-3|AAP86612.1| 361|Caenorhabditis elegans Hypothetical
protein Y48G9A.9b protein.
Length = 361
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 147 NTLNCQQGIWVHTVIEHFHVVFK 215
NT C QG HT+I+ + ++F+
Sbjct: 137 NTFICTQGPLQHTIIDFWRMIFQ 159
>AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical
protein Y48G9A.9a protein.
Length = 352
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 147 NTLNCQQGIWVHTVIEHFHVVFK 215
NT C QG HT+I+ + ++F+
Sbjct: 128 NTFICTQGPLQHTIIDFWRMIFQ 150
>Z81533-13|CAB04336.2| 323|Caenorhabditis elegans Hypothetical
protein F36G9.6 protein.
Length = 323
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 3 YILITIIHVF-ILQYFLYNLFNYIMST-IHVDYTFSYFSNFVMFIVEFF 143
YI T++ VF IL FL + ++ + T S+F + + FI +FF
Sbjct: 37 YIPATVVVVFHILSKFLTEYYERNVNVQLFGVITLSHFMSLLFFIADFF 85
>AC006629-10|ABC48257.1| 312|Caenorhabditis elegans Hypothetical
protein F12E12.8 protein.
Length = 312
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +3
Query: 6 ILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHT 185
+ + I+V + +N+ N I T+ + +T + + E T+ +G V +
Sbjct: 49 LTLLAINVINRVHLRFNVENVIF-TVDILHTDPNGTLHIEITYENVKRTIRNLEGYSVRS 107
Query: 186 VIEHFHVVF 212
VIEHF +F
Sbjct: 108 VIEHFMAIF 116
>Z82086-5|CAB04992.2| 325|Caenorhabditis elegans Hypothetical
protein ZK228.5 protein.
Length = 325
Score = 24.6 bits (51), Expect = 9.4
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +3
Query: 3 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVH 182
+ + I VFI F+ YI+ +++DY ++ +N I F L+ + VH
Sbjct: 236 FFVALCIQVFIPLVFISIPVAYIILAVYLDY-YNQAANNSALIAIAFHGILSTLTMLIVH 294
Query: 183 TVIEHFHVVF 212
T H + F
Sbjct: 295 TPYRHATLEF 304
>U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 107 protein.
Length = 357
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 129 IVEFFVNTLNCQQGIWVHTVIEHFHVVFKAHF 224
I EF+VNT+ I +I F +K HF
Sbjct: 216 INEFYVNTVRDNSAISQEDIIRVFEPYWKYHF 247
>U50300-5|AAC48103.2| 337|Caenorhabditis elegans Serpentine
receptor, class t protein18 protein.
Length = 337
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 33 ILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 143
+LQ FL+ F+ S ++V F S ++ I FF
Sbjct: 259 LLQAFLFCFFHATSSVVYVYMNFFEISELLIVIGHFF 295
>AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 129 IVEFFVNTLNCQQGIWVHTVIEHFHVVFKAHF 224
I EF+VNT+ I +I F +K HF
Sbjct: 216 INEFYVNTVRDNSAISQEDIIRVFEPYWKYHF 247
>AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 129 IVEFFVNTLNCQQGIWVHTVIEHFHVVFKAHF 224
I EF+VNT+ I +I F +K HF
Sbjct: 216 INEFYVNTVRDNSAISQEDIIRVFEPYWKYHF 247
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 199 KCSMTVCTQIPCWQFNVLTKNSTI 128
+C + VC+ +PC V N+ I
Sbjct: 255 RCELDVCSSVPCQNGGVCRSNNGI 278
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 199 KCSMTVCTQIPCWQFNVLTKNSTI 128
+C + VC+ +PC V N+ I
Sbjct: 255 RCELDVCSSVPCQNGGVCRSNNGI 278
>AF125954-1|AAK68174.1| 340|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 60 protein.
Length = 340
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 15 TIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFV 146
+I+H+ +L Y ++N + ++ T+ S F N+V+ FF+
Sbjct: 21 SILHI-LLFYLIFNKTSKVLRTMRYFLYPSNFFNYVLAAFTFFL 63
>AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical
protein F57B10.6 protein.
Length = 829
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 140 KLYDKHYKIRKIAKRVIDVDCTHNVVKEVI 51
K+ K KIR+IA +D N +KEVI
Sbjct: 109 KVLKKSQKIREIASGGLDDVALANAIKEVI 138
>AC006769-2|AAF60583.2| 340|Caenorhabditis elegans Hypothetical
protein Y45G12C.7 protein.
Length = 340
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 15 TIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFV 146
+I+H+ +L Y ++N + ++ T+ S F N+V+ FF+
Sbjct: 21 SILHI-LLFYLIFNKTSKVLRTMRYFLYPSNFFNYVLAAFTFFL 63
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 227 RKMRFEDDMEVLYDGVHPNPLLAIQCINEKLYD 129
+K+ E+D E L DGV ++Q +NE LYD
Sbjct: 681 QKLEEEEDEEDL-DGVPLEEEKSVQNMNESLYD 712
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 199 KCSMTVCTQIPCWQFNVLTKNSTI 128
+C + VC+ +PC V N+ I
Sbjct: 255 RCELDVCSSVPCQNGGVCRSNNGI 278
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 199 KCSMTVCTQIPCWQFNVLTKNSTI 128
+C + VC+ +PC V N+ I
Sbjct: 255 RCELDVCSSVPCQNGGVCRSNNGI 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,057,416
Number of Sequences: 27780
Number of extensions: 91162
Number of successful extensions: 370
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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