Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j13
         (245 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   2.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   3.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   3.0  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    19   9.1  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 149 INEKLYDKH 123
           +N KLYDKH
Sbjct: 12  LNPKLYDKH 20



 Score = 20.2 bits (40), Expect = 3.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 98  RVIDVDCTHNV 66
           R++DVD  HN+
Sbjct: 77  RILDVDWLHNI 87


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 2   IHTNNYYTCFYFTIL 46
           IH NNY    Y+ I+
Sbjct: 323 IHNNNYNKKLYYNII 337


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 164 LAIQCINEKLYDKHYKIRK 108
           L IQC+ +K  ++  KIR+
Sbjct: 143 LGIQCVKKKDIEEALKIRE 161


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 164 LAIQCINEKLYDKHYKIRK 108
           L IQC+ +K  ++  KIR+
Sbjct: 143 LGIQCVKKKDIEEALKIRE 161


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/27 (22%), Positives = 13/27 (48%)
 Frame = -1

Query: 152 CINEKLYDKHYKIRKIAKRVIDVDCTH 72
           C+N+ + + H K      +    +CT+
Sbjct: 26  CVNKSMLNSHLKSHSNVYQYRCANCTY 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,038
Number of Sequences: 438
Number of extensions: 1272
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)