Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j12
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    24   3.1  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    23   5.4  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    23   7.2  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    23   7.2  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    22   9.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    22   9.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    22   9.5  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 208 SLDSPRLDGYVLASSPIPHTDWNEELKLYAQSHGY 104
           SLD  +L   + A  PI   ++  + KLYA  H +
Sbjct: 336 SLDYSQLFSILYALYPINFLEFLRDPKLYASKHNF 370


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 140 IPVGVWYGRRCQNISVQTRR 199
           IPVGV++ R   N+SV+  R
Sbjct: 615 IPVGVFFTRNPHNLSVKKIR 634


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 163 PIPHTDWNEELKLYAQS 113
           P+    WN+E +LY +S
Sbjct: 140 PLTDEQWNQEFELYKKS 156


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 136 LHSSRCVVWATMPKHIRPNEE 198
           L S+RC VW T P   R  ++
Sbjct: 297 LVSTRCSVWLTSPSSQRTTKD 317


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 34  DYLNFLKSHVRQFRHLL 84
           D++N LKS  ++F HL+
Sbjct: 174 DFVNALKSFYQKFPHLM 190


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 7    FLIHSSRLDDYLNFLKSHV 63
            F I S +LD+YLN L S++
Sbjct: 4485 FDIASFQLDEYLNTLPSNI 4503


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 4   VFLIHSSRLDDYLNFLKS 57
           +F+IHS+ +D +L F+ S
Sbjct: 267 IFIIHSAIIDTFLIFVVS 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,885
Number of Sequences: 5004
Number of extensions: 9630
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)