Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j12
         (230 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0272 - 23738514-23738817,23739382-23740748                       27   2.8  
07_01_0483 + 3633010-3633203,3633652-3633957,3634598-3634821,363...    26   4.9  
05_06_0062 - 25276994-25277089,25277374-25277448,25281149-252812...    25   6.5  

>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 223 KRPRRSLDSPRLDGYVLASSPIPHTDWN-EELKLY 122
           + P +S+DS  LDGY   +  +    W+ EE K Y
Sbjct: 436 ENPEKSMDSVHLDGYAFFAVGMGPGKWSAEERKTY 470


>07_01_0483 +
           3633010-3633203,3633652-3633957,3634598-3634821,
           3635722-3635825,3636528-3636662,3637537-3637705,
           3638074-3638209,3639200-3639338,3640487-3640663,
           3640874-3641041,3641363-3641458,3642217-3642345,
           3642439-3642669
          Length = 735

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 117 WAYSFNSSFQSVCGMGDDAKTYPSKRGESKERRG 218
           W Y F    + V  M  D K   S  GE + R+G
Sbjct: 679 WPYQFRKIDELVQDMDKDGKWVNSTEGELRRRKG 712


>05_06_0062 -
           25276994-25277089,25277374-25277448,25281149-25281262,
           25282220-25282321,25282422-25282519,25282698-25282791,
           25282906-25282968,25283253-25283351,25283579-25283722
          Length = 294

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 142 SSRCVVWATMPKHIRPNEENLKNG 213
           + R  +W  M  H+  N EN+K G
Sbjct: 170 AKRWTMWEMMTAHLIQNHENIKRG 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,818,115
Number of Sequences: 37544
Number of extensions: 64261
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)