Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j12
         (230 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   3.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   3.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   6.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    19   8.0  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    19   8.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    19   8.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    19   8.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 223 KRPRRSLDSPRLDGYVLA 170
           ++  +  DSPR+  Y++A
Sbjct: 619 RKAHQEKDSPRIQTYIMA 636


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 134 FFIPVGVWYGRRCQNISVQTRR 199
           F IP G  YG RC+   ++  R
Sbjct: 546 FGIPTGTLYG-RCKREGIELSR 566


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 13  IHSSRLDDYLNFLKSHV 63
           +  S L+DY N + +H+
Sbjct: 353 VFRSALEDYCNIVATHL 369


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +2

Query: 137 FIPVGVWYGRRCQNIS 184
           F+P+  W+G     +S
Sbjct: 117 FVPISGWHGDNMLEVS 132


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -2

Query: 190 LDGYVLASSPIPHTDWNEE 134
           +DG+V+A +   +TD +++
Sbjct: 134 IDGHVVAINETTYTDGSDD 152


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +2

Query: 137 FIPVGVWYGRRCQNIS 184
           F+P+  W+G     +S
Sbjct: 133 FVPISGWHGDNMLEVS 148


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +2

Query: 137 FIPVGVWYGRRCQNIS 184
           F+P+  W+G     +S
Sbjct: 190 FVPISGWHGDNMLEVS 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,640
Number of Sequences: 438
Number of extensions: 665
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)