Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j09
(843 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 31 1.0
AF125959-3|AAD14731.1| 531|Caenorhabditis elegans Udp-glucurono... 30 1.8
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 3.1
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 3.1
AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical... 29 3.1
AF067608-14|AAK95864.1| 551|Caenorhabditis elegans Hypothetical... 29 3.1
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla... 29 4.1
AL132952-8|CAB61142.2| 186|Caenorhabditis elegans Hypothetical ... 29 4.1
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 29 4.1
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ... 29 4.1
Z81586-10|CAD56598.1| 349|Caenorhabditis elegans Hypothetical p... 29 5.5
AL023845-7|CAA19542.1| 381|Caenorhabditis elegans Hypothetical ... 29 5.5
AF016655-9|AAK31440.1| 348|Caenorhabditis elegans Hypothetical ... 29 5.5
Z81072-6|CAB03017.2| 196|Caenorhabditis elegans Hypothetical pr... 28 7.2
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF067613-7|AAY86236.1| 123|Caenorhabditis elegans Hypothetical ... 28 7.2
Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical p... 28 9.5
U28741-4|AAA68328.1| 747|Caenorhabditis elegans Hypothetical pr... 28 9.5
U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone... 28 9.5
AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical ... 28 9.5
AF408758-1|AAO27837.1| 309|Caenorhabditis elegans nuclear recep... 28 9.5
AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear recep... 28 9.5
AF273772-1|AAG15121.1| 443|Caenorhabditis elegans nuclear recep... 28 9.5
AF022980-3|AAG24187.2| 396|Caenorhabditis elegans Serpentine re... 28 9.5
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = -3
Query: 721 IRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH---YSVSCQNGS 551
I+ +K ++L++ + + +E +LER+ DK D ++ KD H Q
Sbjct: 1072 IQKQAKKIDELKEECRKRKNEA-SRLERKLEDKEAMMADCVKELKDSHKERLKEMEQKVE 1130
Query: 550 VLKSKFAKILKSHDYTDKKSIETYEK 473
+K K +K L++ + T K IET+++
Sbjct: 1131 DVKRKNSK-LENENSTQKSQIETFQR 1155
>AF125959-3|AAD14731.1| 531|Caenorhabditis elegans
Udp-glucuronosyltransferase protein14 protein.
Length = 531
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = -3
Query: 346 VIVP-FAHEINDTG-LYEYDVLAYVDSVEF-DGKQFEEFVQKLILPSSFNDSEKVL---Y 185
++VP FA + N+ L + D ++ DG++F + V+++++ +ND+ KVL
Sbjct: 395 LMVPIFADQFNNANMLARHGGAIPYDKLDLADGEKFTKTVREMVINPKYNDNAKVLLIIL 454
Query: 184 YNEASKNKNMIYKALEFTTE 125
N+ K + K LEF E
Sbjct: 455 LNQPIDPKLNLMKHLEFAME 474
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.9 bits (64), Expect = 2.4
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Frame = -3
Query: 619 DGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIE-TYEK--YCLPQLVD 449
DGF +N+ + + + L K++ +++SH Y ++ I Y K + +
Sbjct: 2527 DGFGENMIRTTSQVDEMKQMFRNHLHGKYSPLVQSHMYAPRQRIMMAYLKGDFMTIYFYN 2586
Query: 448 KHNDCYVAV--CVLK-PGFENGSNQVL-SFEYNPIGNKVIVPFAHEINDTGLYEYDVLAY 281
H + C K GF N +++L + +G + PF E N+ Y+Y+VL +
Sbjct: 2587 YHYSIHKEAVDCTNKIVGFHNAKSRLLREIGLHKMGITHLSPFHTEPNNE--YDYEVLIW 2644
Query: 280 VDSVEFDGKQF 248
D + K+F
Sbjct: 2645 TDPMTLISKEF 2655
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.9 bits (64), Expect = 2.4
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Frame = -3
Query: 619 DGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIE-TYEK--YCLPQLVD 449
DGF +N+ + + + L K++ +++SH Y ++ I Y K + +
Sbjct: 2527 DGFGENMIRTTSQVDEMKQMFRNHLHGKYSPLVQSHMYAPRQRIMMAYLKGDFMTIYFYN 2586
Query: 448 KHNDCYVAV--CVLK-PGFENGSNQVL-SFEYNPIGNKVIVPFAHEINDTGLYEYDVLAY 281
H + C K GF N +++L + +G + PF E N+ Y+Y+VL +
Sbjct: 2587 YHYSIHKEAVDCTNKIVGFHNAKSRLLREIGLHKMGITHLSPFHTEPNNE--YDYEVLIW 2644
Query: 280 VDSVEFDGKQF 248
D + K+F
Sbjct: 2645 TDPMTLISKEF 2655
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/83 (20%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = -3
Query: 283 YVDSVEFDGKQFEEFVQKLILPS-SFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKS 107
Y+ + + + ++F ++++ + ++ S K+L + A K + K L++ T W K+
Sbjct: 259 YLQAGKLVSPKCDQFREQIVATAVEYDGSVKMLQFENALKKHSGKQKRLKYQT--GWWKA 316
Query: 106 NKFNWKIFCNGFIYDKKSKALYV 38
+K +++ NG++ K+ L +
Sbjct: 317 SKSHYERAVNGYVAMPKTPVLSI 339
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/83 (20%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = -3
Query: 283 YVDSVEFDGKQFEEFVQKLILPS-SFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKS 107
Y+ + + + ++F ++++ + ++ S K+L + A K + K L++ T W K+
Sbjct: 259 YLQAGKLVSPKCDQFREQIVATAVEYDGSVKMLQFENALKKHSGKQKRLKYQT--GWWKA 316
Query: 106 NKFNWKIFCNGFIYDKKSKALYV 38
+K +++ NG++ K+ L +
Sbjct: 317 SKSHYERAVNGYVAMPKTPVLSI 339
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/83 (20%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = -3
Query: 283 YVDSVEFDGKQFEEFVQKLILPS-SFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKS 107
Y+ + + + ++F ++++ + ++ S K+L + A K + K L++ T W K+
Sbjct: 259 YLQAGKLVSPKCDQFREQIVATAVEYDGSVKMLQFENALKKHSGKQKRLKYQT--GWWKA 316
Query: 106 NKFNWKIFCNGFIYDKKSKALYV 38
+K +++ NG++ K+ L +
Sbjct: 317 SKSHYERAVNGYVAMPKTPVLSI 339
>AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical
protein B0511.14b protein.
Length = 470
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 730 SGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKD 584
+GP S R+++D R K K DEQ D Y +KI + NIQ ++
Sbjct: 310 TGPSTSSERRSSDPTIRKKGKTDEQLD----HYHEKIREKYRNIQKIQE 354
>AF067608-14|AAK95864.1| 551|Caenorhabditis elegans Hypothetical
protein B0511.14a protein.
Length = 551
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 730 SGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKD 584
+GP S R+++D R K K DEQ D Y +KI + NIQ ++
Sbjct: 310 TGPSTSSERRSSDPTIRKKGKTDEQLD----HYHEKIREKYRNIQKIQE 354
>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
protein 8 protein.
Length = 1206
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 391 SNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDV 290
+N ++ + N N ++ PF I D GL E DV
Sbjct: 351 ANAIIIDDVNSFDNTIVGPFIERIKDVGLTEADV 384
>AL132952-8|CAB61142.2| 186|Caenorhabditis elegans Hypothetical
protein Y51H4A.8 protein.
Length = 186
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3
Query: 334 FAHEINDTGLYEYDVLAYVDSVEFDGKQFEE-FVQKLILPSSFNDSEKVLYYNEASKN 164
F++E+N LY YD LA EF+ QF++ + Q++++ + VL N N
Sbjct: 31 FSYEMNPPALYTYDSLA-----EFENGQFDQAYAQRVVVSDVQSAINDVLQANSIPLN 83
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -3
Query: 700 NNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSV 569
N DL ++ ++ + FD+L + D +D ++I++ K YS+
Sbjct: 420 NEDLDEQSLEEIQKAFDELFEKVRDDLDDLENDIEWAKAISYSM 463
>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1152
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 391 SNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDV 290
+N ++ + N N ++ PF I D GL E DV
Sbjct: 325 ANAIIIDDVNSFDNTIVGPFIERIKDVGLTEADV 358
>Z81586-10|CAD56598.1| 349|Caenorhabditis elegans Hypothetical
protein T05F1.13 protein.
Length = 349
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 655 FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLK 542
FD +E E DK + Q+++DE + C NG +K
Sbjct: 291 FDGIEYELFDK--NLNSGTQFYEDEEKKIDCLNGRNIK 326
>AL023845-7|CAA19542.1| 381|Caenorhabditis elegans Hypothetical
protein Y51B9A.9 protein.
Length = 381
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/62 (20%), Positives = 32/62 (51%)
Frame = -3
Query: 226 ILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKA 47
+LPS F ++ +V+ +++ S+ + +I K + +W + ++FC I ++
Sbjct: 21 LLPSQFGNAMEVIAFDQISERRVVIKKVVLPENFDNWQHWRRAQRELFCTLHIQEENFVK 80
Query: 46 LY 41
+Y
Sbjct: 81 MY 82
>AF016655-9|AAK31440.1| 348|Caenorhabditis elegans Hypothetical
protein C17F4.5 protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = -3
Query: 688 RDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHD 509
R ++S D D R DG +NI+ + HY + N ++K FA D
Sbjct: 205 RIHLESADDYTVDDFMRLIEKWADGTTENIKTAGNFHYKFTLSNPELVKQVFALSEVLGD 264
Query: 508 YTDKKSIETYEKYC 467
K I+ + K C
Sbjct: 265 AGKKDPIKFFGKVC 278
>Z81072-6|CAB03017.2| 196|Caenorhabditis elegans Hypothetical
protein F30A10.9 protein.
Length = 196
Score = 28.3 bits (60), Expect = 7.2
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 4/145 (2%)
Frame = -3
Query: 841 QTVIRDCHVDEQTRELVYINKIMNTQLTKPVLMMFNIS-GPIRSVTRKNNDLRDRIKSKV 665
Q VIR VDEQ +LV KI + + M +N GP V N + +K+++
Sbjct: 29 QRVIRTPKVDEQELKLVRAPKI-----SSAMFMKYNTQLGPPFHVIVDTNFVNFAVKNRI 83
Query: 664 DEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFA-KILKSHDYTDKKSI 488
D + + + D + F I Y D V + V + K A K+LK K
Sbjct: 84 D-----MFQGFMDCL--FAKTIVYATD---CVLAELEKVRRFKIALKVLKDPRVQRLKCE 133
Query: 487 E--TYEKYCLPQLVDKHNDCYVAVC 419
TY CL Q V +H VA C
Sbjct: 134 HKGTYADDCLVQRVTQHKCYIVATC 158
>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical protein
F44E2.4 protein.
Length = 1283
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 574 SVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQLVDKHNDCYVAVCVLKP 407
++SC G + KFA+ ++S T K+ + + LP+ +D D VA C P
Sbjct: 910 NLSCLFGQAQEPKFAQCIRSTISTLKQFNLSTLRAVLPKFIDCTRDIVVAKCGESP 965
>AF067613-7|AAY86236.1| 123|Caenorhabditis elegans Hypothetical
protein F56D6.12 protein.
Length = 123
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 697 NDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQN 557
+D D+ SK+ FD + +D I F+D K EH ++ +N
Sbjct: 20 DDTHDKTVSKLKNDFD---KNTADSIKNFNDEAAKNKKEHEKIAAEN 63
>Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 691 LRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH-YSVSCQNGS 551
L D +K D F +LE+ KID D ++ D+H + C G+
Sbjct: 202 LFDEVKPVTDVDFVELEKAQYKKIDRLIDQLELKADDHVLEIGCGWGA 249
>U28741-4|AAA68328.1| 747|Caenorhabditis elegans Hypothetical
protein F35D2.4 protein.
Length = 747
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 263 KLHTVHVS*DVVLVKSRVVNFVSKRHNNFVTNR 361
KL+ VH+ V V +++NF +K N +V R
Sbjct: 314 KLYPVHILNSAVRVNGQLLNFANKDRNRWVLTR 346
>U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 22 protein.
Length = 579
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = -3
Query: 271 VEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNW 92
VE + K FE + +S ND K++Y + ++ +++ E E+ +K FN+
Sbjct: 303 VEVENKIFELVDHYVRTEASLNDRRKIMYTD--TQIRDVFDTTCECPYENHQLK--PFNY 358
Query: 91 KIFCNGFIYDKKSKALYVKLHNVTSTLNKN 2
K FC +D YV L+KN
Sbjct: 359 KSFCGFVKHDFVMILDYVNQFPEFQALHKN 388
>AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 691 LRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH-YSVSCQNGS 551
L D +K D F +LE+ KID D ++ D+H + C G+
Sbjct: 202 LFDEVKPVTDVDFVELEKAQYKKIDRLIDQLELKADDHVLEIGCGWGA 249
>AF408758-1|AAO27837.1| 309|Caenorhabditis elegans nuclear receptor
NHR-22 protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = -3
Query: 271 VEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNW 92
VE + K FE + +S ND K++Y + ++ +++ E E+ +K FN+
Sbjct: 33 VEVENKIFELVDHYVRTEASLNDRRKIMYTD--TQIRDVFDTTCECPYENHQLK--PFNY 88
Query: 91 KIFCNGFIYDKKSKALYVKLHNVTSTLNKN 2
K FC +D YV L+KN
Sbjct: 89 KSFCGFVKHDFVMILDYVNQFPEFQALHKN 118
>AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear receptor
NHR-22 protein.
Length = 555
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = -3
Query: 271 VEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNW 92
VE + K FE + +S ND K++Y + ++ +++ E E+ +K FN+
Sbjct: 279 VEVENKIFELVDHYVRTEASLNDRRKIMYTD--TQIRDVFDTTCECPYENHQLK--PFNY 334
Query: 91 KIFCNGFIYDKKSKALYVKLHNVTSTLNKN 2
K FC +D YV L+KN
Sbjct: 335 KSFCGFVKHDFVMILDYVNQFPEFQALHKN 364
>AF273772-1|AAG15121.1| 443|Caenorhabditis elegans nuclear receptor
NHR-22 protein.
Length = 443
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = -3
Query: 271 VEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNW 92
VE + K FE + +S ND K++Y + ++ +++ E E+ +K FN+
Sbjct: 167 VEVENKIFELVDHYVRTEASLNDRRKIMYTD--TQIRDVFDTTCECPYENHQLK--PFNY 222
Query: 91 KIFCNGFIYDKKSKALYVKLHNVTSTLNKN 2
K FC +D YV L+KN
Sbjct: 223 KSFCGFVKHDFVMILDYVNQFPEFQALHKN 252
>AF022980-3|AAG24187.2| 396|Caenorhabditis elegans Serpentine
receptor, class w protein2 protein.
Length = 396
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/69 (21%), Positives = 35/69 (50%)
Frame = +2
Query: 425 RHVAVVVFVDQLGQTVFFVSFNRLFIGIIMTF*NFSKLAFQHAAILATYRIVFIFKILDV 604
++V + + D++ +V F + + + S L + ++ YRI+ + ILD+
Sbjct: 25 KYVEIPSWFDEVFLKFNYVIAILQFFAVAINLIHLSVLTRKELRAISIYRIMIVICILDI 84
Query: 605 IVKSINFIA 631
I + ++FI+
Sbjct: 85 ISEILSFIS 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,393,096
Number of Sequences: 27780
Number of extensions: 392525
Number of successful extensions: 1272
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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