Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j08
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   1.3  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    23   4.1  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    23   5.4  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 3   FFRYDVYNSILTTMLKFRSFKNSVPKNMHKDN 98
           FF +   NS+  T L F S  N  P+++ +DN
Sbjct: 192 FFTWKDPNSLSPTKLSFLSTSNIDPEDLTEDN 223


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 98  LSYSFSNIEVVISFKTYTNHKW 163
           + Y  S+ +VV ++K Y NHK+
Sbjct: 324 IEYILSHPQVVPAWKEYINHKF 345


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 116 NIEVVISFKTYTNHKW 163
           NI+++IS+  YTN  W
Sbjct: 46  NIQMLISWLQYTNPNW 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,376
Number of Sequences: 5004
Number of extensions: 8085
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)