Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j08
         (165 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-2|CAA19567.1|  327|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z47358-3|CAA87430.1|  127|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine r...    25   7.2  

>AL023856-2|CAA19567.1|  327|Caenorhabditis elegans Hypothetical
           protein Y94A7B.5 protein.
          Length = 327

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 89  VHVFGN*--IFKTTKFQHSSKNAIINI 15
           +H+FG    +FKT +  HS+K A+ N+
Sbjct: 26  IHLFGGFCILFKTPEIMHSTKWALFNL 52


>Z47358-3|CAA87430.1|  127|Caenorhabditis elegans Hypothetical
           protein ZK1307.2 protein.
          Length = 127

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 3   FFRYDVYNSILTTMLKFRSFKNSVPK-NMHKDNY 101
           F+R   YNS L  +  F S++N   + + HK+ Y
Sbjct: 57  FYRDKFYNSGLPPLYSFASYRNYYHEISFHKNKY 90


>AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 12 protein.
          Length = 341

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 7   SDTMFIIAFLLLC*NFVVLKIQFPKT 84
           ++T+F++AFL++   F +L  QF +T
Sbjct: 164 NNTIFVVAFLMILNLFALLTNQFLRT 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,265
Number of Sequences: 27780
Number of extensions: 41480
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)