Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j08
         (165 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   4.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   4.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    19   7.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   7.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    18   9.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    18   9.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    18   9.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 24  NSILTTMLKFRSFKNSVPK 80
           N+ILT M      +NS+PK
Sbjct: 269 NTILTFMTLASKVENSLPK 287


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 163 PFMIGISFETNNYLNITK 110
           P  + + F  NNY+N+ +
Sbjct: 616 PDSVELLFINNNYINLVR 633


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 85  MFLGTEFLKLRNFNIVVRMLL 23
           +FL    + +R FN++  MLL
Sbjct: 268 LFLNMASVFMRIFNLICMMLL 288


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/32 (21%), Positives = 14/32 (43%)
 Frame = +3

Query: 6   FRYDVYNSILTTMLKFRSFKNSVPKNMHKDNY 101
           ++Y  YN+       + ++ N+   N  K  Y
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYY 353


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 82  FLGTEFLKLRNFNIVVRMLL 23
           FL    + +R FN++  MLL
Sbjct: 237 FLNMASVFMRIFNLICMMLL 256


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -1

Query: 111 NEYDNYLCACFWELNF 64
           N Y+NY    ++ +N+
Sbjct: 99  NNYNNYNKKLYYNINY 114


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   FFRYDVYNSILTTMLKFRSFKNSVPKN 83
           FF Y +    L  +  +  F N+V K+
Sbjct: 288 FFSYALGLGALVALGSYNKFNNNVYKD 314


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   FFRYDVYNSILTTMLKFRSFKNSVPKN 83
           FF Y +    L  +  +  F N+V K+
Sbjct: 341 FFSYALGLGALVALGSYNKFNNNVYKD 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,213
Number of Sequences: 438
Number of extensions: 636
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)