Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j07
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   2.2  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   6.6  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   8.7  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.7  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 616 LYMQRHVAACWAVRTRRQSAGCARARWS 533
           L++++H    W +R  R  AGC R R S
Sbjct: 527 LHLEQHHLYGWCLRLTRTEAGCLRGRSS 554


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 343 DTDADRSLPSWMSPLERSTIDNKYKPRH*RNESKMAAAIMRSHSKLLLSLVARV 182
           + D DR LPS +SP +R     K  P      SK++ A+  +      SL +RV
Sbjct: 358 EVDNDRILPSVLSPRDRVNPVMKIGPETKPVPSKLSTALHAARKSTDGSLGSRV 411


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 634 LYLHAPLYMQRHVAACWAVRTRRQSA 557
           L+   PL++QR    CW + T+R  +
Sbjct: 401 LFDEHPLHVQRVANQCWDIHTKRNDS 426


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
 Frame = -1

Query: 240 WRRRSCALTLNYCYL*SHAYCMQKKYQ----FDFVLTLFRRALFSLKFC 106
           W+R +C    N      H    Q  +     FDF   LFR  L SLK C
Sbjct: 281 WKRATCQQLSNAVKAILHLRSSQNLHVQDALFDFCFILFRDCLDSLKDC 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,505
Number of Sequences: 5004
Number of extensions: 41567
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)