Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j07
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0228 + 15105752-15105921,15106774-15106919,15107369-151074...    29   3.9  
04_03_0316 + 14261942-14262506,14262710-14263134                       29   5.2  
04_01_0420 - 5561632-5563908                                           29   5.2  
03_05_1107 - 30444481-30445161                                         29   5.2  
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    28   9.1  

>11_04_0228 +
           15105752-15105921,15106774-15106919,15107369-15107448,
           15107598-15107720,15107814-15107906
          Length = 203

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 695 LSQWWATAAVHVAWPMALLWPVLACATIYAAP 600
           L+ WW      V+W  +  W   AC  + + P
Sbjct: 13  LTWWWLACCCFVSWVASSSWTAAACVAVSSLP 44


>04_03_0316 + 14261942-14262506,14262710-14263134
          Length = 329

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 545 SGTA-GRLPPRTHRPARRDMALHI*WRMQVQATVRPWARPRAPLRSPTTARARAALMTSP 721
           SGT+   LPPRT+R  R + A  +   +       P+    APLR P       AL    
Sbjct: 202 SGTSITSLPPRTYRAVREEFAAQVKLPVVPGNATDPFTCFSAPLRGPKPDVPTMALHFEG 261

Query: 722 ATI 730
           AT+
Sbjct: 262 ATM 264


>04_01_0420 - 5561632-5563908
          Length = 758

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 616 LYMQRHVAACWAVRTR-RQSAGCARARWSCTPRRPDSCCSPLTRASARTL 470
           +Y  +HV + +  R R R++A  AR +W C    PDS  +  T  + R L
Sbjct: 92  VYSYQHVVSGFTARLRPREAAAMARLQW-CVDAVPDSTYTLTTTDTPRLL 140


>03_05_1107 - 30444481-30445161
          Length = 226

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 577 RTRRQSAGCARA-RWSCTPRRPDSCCSP 497
           R RR+ A   RA RW C  R P  C  P
Sbjct: 168 RRRRERAQARRAVRWICIAREPQPCSGP 195


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 574 TRRQSAGCARARWSCTPRRPDSCCSPLTRASA 479
           +RR+  G  RAR    P  P S CS   RA+A
Sbjct: 81  SRRRCGGSVRARTLALPATPASACSFRLRATA 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,182
Number of Sequences: 37544
Number of extensions: 361060
Number of successful extensions: 1343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)