Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j07
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical ...    28   6.2  
U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK287.1 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 666 ARGLAHGLTVACTCMRHY-ICSAMSRRAGRCVRGGSRPAVPE 544
           A+G    +   C C   Y  CSA  +  G C  G S+ +VP+
Sbjct: 118 AKGKKQCVKKECACRTVYGFCSASCKCGGDCTNGASKFSVPK 159


>AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical
           protein T22D1.3b protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 738 HVSIVAGDVISAALALAVVGDRSGARGLAHGLTVACTCMRHYICSAMSRRAGRCVRGGSR 559
           HV ++AG+V++ A A  ++    GA GL  G+     C+   +  A+ R  G  V   +R
Sbjct: 314 HVQVIAGNVVTRAQAKLLID--QGADGLRIGMGSGSICITQDV-MAVGRAQGTAVYDVAR 370

Query: 558 PA 553
            A
Sbjct: 371 YA 372


>AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical
           protein T22D1.3a protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 738 HVSIVAGDVISAALALAVVGDRSGARGLAHGLTVACTCMRHYICSAMSRRAGRCVRGGSR 559
           HV ++AG+V++ A A  ++    GA GL  G+     C+   +  A+ R  G  V   +R
Sbjct: 314 HVQVIAGNVVTRAQAKLLID--QGADGLRIGMGSGSICITQDV-MAVGRAQGTAVYDVAR 370

Query: 558 PA 553
            A
Sbjct: 371 YA 372


>U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical
           protein B0361.11 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 737 MSLSLLVTSSALPWLSQWWATAAVHVAWPMALLWPVL 627
           +S++ + T   L   ++ W T   +VAW + ++W +L
Sbjct: 215 LSVASVATCEYLSEKARAWITVVYNVAWSLGMVWTLL 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,702,198
Number of Sequences: 27780
Number of extensions: 267929
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)