Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j06
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    65   1e-11
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    28   1.5  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    28   1.9  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    27   4.4  
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c...    26   5.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   7.8  
SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas...    26   7.8  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 35/113 (30%), Positives = 56/113 (49%)
 Frame = -1

Query: 782 LRILNKLTKWKNARIMMLVVFKSAPILKRTLKVRHALMQFYVLKLLKMQTKYLGRQWRKT 603
           LR+L K+ K+ N R  ++        LK+ L + H  ++ Y LK+LK+   +LG +W++ 
Sbjct: 642 LRVLEKVCKYSNIRKEIIARSNLHENLKKLLAIPHDKLRLYALKVLKLSVPFLGLKWKQA 701

Query: 602 NMKTISAIYSKVRHRLNDDWAFGNDVDARPWDFQSEECALRISVDRFNHRRYG 444
           NM  I+ IY      L D W F  +        Q +E  L I +  ++ R YG
Sbjct: 702 NMSIITQIYLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAILIRFYHIRLYG 754


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 398 INSVLESNIELDEEFKENYELW-LEQEVYNNEINWDVLLST*SLIFLANRGKYMVW 234
           I++ LE   E+ E+F++NY++W   Q++ +   N++  L     +F  +   Y VW
Sbjct: 93  IDNELEWLDEIAEDFQKNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYHVW 148


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = +2

Query: 605 FFATVFLNILFAFLVISVHKTASRHVLLLMFFSKLVRF*IQLAS*S*HFSILLIYSKFS 781
           + ++V + ILF++L I + K++  H L+L F+  L+ F + +      F++L   S FS
Sbjct: 67  YVSSVLMLILFSWLAIHIPKSSVPHALIL-FYVYLIDFLLNVL-----FTVLFALSWFS 119


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 524 LHHFQMPNHHLIYDELLNILRLLF 595
           L HFQ  N H  Y EL+N   LLF
Sbjct: 239 LVHFQSRNFHQWYFELVNNFNLLF 262


>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 377 YSPGHCLCLCPRESDQFLVLYLYHISCG*ICLH*FLMHILHFESPRVLHLH 529
           YSPG  L     ES++ L L L  +S G  C++  +      E P  L LH
Sbjct: 191 YSPGDTLSAHIDESEEDLTLPLISLSMGLDCIY-LIGTESRSEKPSALRLH 240


>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -1

Query: 500 SEECALRISVDRFNHRRYGTGTEQEIDLTPLDTDINSVLESNIELDEEFKENYELWL 330
           + E  L++++DR NH  Y     Q++ L  L  +I++ + +       FK     W+
Sbjct: 143 TSEARLQLNIDRLNH--YDETASQDLKLRELSAEIDTEMSNFRTQLASFKTQTLQWV 197


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 446 GTGTEQEIDLTPLDTDINSVLESNIELDEEFKENYELWLEQEVY 315
           G  +  ++ +  L  +I++ L  NI   +EF     LW+ Q ++
Sbjct: 455 GMHSSNDLSIRSLAVEIHTTLRYNIYQKQEFGPPVSLWVYQALF 498


>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = -1

Query: 560 RLNDDWAFGNDVDARPWDFQSEECALRISVDRFNHRRYGTGTEQEIDLTPLDTDINSVLE 381
           +L   + F N ++A  W F S    + +   + NH    T    ++D+T    D   + E
Sbjct: 26  KLFKSFRFKNFIEA--WGFMS---CVALRAQQLNHHPEWTNVYNKVDITLTTHDTKGLTE 80

Query: 380 SNIELDE 360
            +++L E
Sbjct: 81  KDLKLAE 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,349
Number of Sequences: 5004
Number of extensions: 67289
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)