Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j06
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-1|AAA82421.1|  929|Caenorhabditis elegans Hypothetical pr...   186   2e-47
AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm rece...    30   2.4  
Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z69635-2|CAA93462.1|  555|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z69635-1|CAA93459.1|  515|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U97009-4|AAC69035.1|  336|Caenorhabditis elegans Seven tm recept...    28   9.6  

>U41264-1|AAA82421.1|  929|Caenorhabditis elegans Hypothetical protein
            F10E7.8 protein.
          Length = 929

 Score =  186 bits (452), Expect = 2e-47
 Identities = 95/187 (50%), Positives = 128/187 (68%), Gaps = 20/187 (10%)
 Frame = -1

Query: 785  LLRILNKLTKWKNARIMMLVVFKSAPILKRTLKVRHALMQFYVLKLLKMQTKYLGRQWRK 606
            L+R+LNKL K KN R+ ML+VFKSAP+LKR  KVR +++Q YVLK +KMQ++YLGRQWRK
Sbjct: 734  LIRLLNKLVKAKNDRVKMLMVFKSAPVLKRLFKVRVSVLQLYVLKAIKMQSRYLGRQWRK 793

Query: 605  TNMKTISAIYSKVRHRLNDDWAFGNDVDARPWDFQSEECALRISVDRFNHRRYGTGTEQ- 429
            +NM  ISAIYS+VRHR+ DDWAF +D+  R  D+Q E+  ++ S++RF+ RRY     Q 
Sbjct: 794  SNMDIISAIYSRVRHRMTDDWAFASDI-KRKCDYQKEDSLIKASIERFHSRRYSALYPQF 852

Query: 428  --EI-----------------DLTPLDTDINSVLESNIELDEEFKENYELWLEQEVYNNE 306
              E+                 D  P+DT  +SVL +N++L   FK++YE WLEQEV+N  
Sbjct: 853  AIEVNDAPMPGDDYLNRVDMRDFEPVDTCAHSVLGANLKLGRHFKKDYEKWLEQEVFNAS 912

Query: 305  INWDVLL 285
            I+WD LL
Sbjct: 913  IDWDKLL 919


>AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 84 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 371 ELDEEFKENYELWLEQEVYNNEI 303
           +L EEFK NY L ++Q +YN  I
Sbjct: 163 QLTEEFKTNYNLTMDQVLYNGPI 185


>Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 190 ITDNTESTTISQLASQTMYLPLLAKKIKLYVDN 288
           +TD TES   + +A++TM  P+L   ++L ++N
Sbjct: 328 LTDYTESARANAVAARTMRTPMLKDTVQLELEN 360


>Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 190 ITDNTESTTISQLASQTMYLPLLAKKIKLYVDN 288
           +TD TES   + +A++TM  P+L   ++L ++N
Sbjct: 328 LTDYTESARANAVAARTMRTPMLKDTVQLELEN 360


>Z69635-2|CAA93462.1|  555|Caenorhabditis elegans Hypothetical
           protein F19B6.1b protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 500 SEECALRISVDRFNHRRYGTGTEQEIDLTPLD 405
           +E C L   +  F  R YGTG EQ++D  P D
Sbjct: 524 TENCYLIPGMGNFGDRYYGTGLEQDMD-EPFD 554


>Z69635-1|CAA93459.1|  515|Caenorhabditis elegans Hypothetical
           protein F19B6.1a protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 500 SEECALRISVDRFNHRRYGTGTEQEIDLTPLD 405
           +E C L   +  F  R YGTG EQ++D  P D
Sbjct: 484 TENCYLIPGMGNFGDRYYGTGLEQDMD-EPFD 514


>U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical
           protein H03E18.2 protein.
          Length = 204

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 554 LIYDELLNILRLLFSCWFFATVFLNILFAFLVISVHKTAS 673
           ++YD  L ++ + F+ W   TV + ++F++   S H + S
Sbjct: 65  MLYDCDLRMIDMAFAIWPIVTVTIALVFSYFSYSTHSSTS 104


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 371  ELDEEFKENYELWLEQEVYNNEIN 300
            E+DE+ K+  + WL  E++NNE++
Sbjct: 1080 EIDEDIKQFEDNWLIYEMFNNELD 1103


>Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical
           protein F57G4.8 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 482 LMHILHFESPRVLHLHHFQMPNHHLIYDELLNILRLLFSCWFF 610
           ++H+L +  P  L   HF   + H+ +D ++N L+   +  FF
Sbjct: 235 IIHVLPYLRPGTLEELHFVPASSHVSFDRIVNTLQFCCAKKFF 277


>AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical
           protein T28F2.7 protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -1

Query: 464 FNH-RRYGTGTEQEIDLTPLDTDINSVLESNIELDEEFKENYELWLEQEVYNNEINWDVL 288
           +NH  R+   T  E  +  +DT +  V+  +  ++    E  ++  + +VY++  ++   
Sbjct: 402 YNHLNRFNDCTPYETFIC-MDTKMKKVVNQSFNIEMPTCEECKVECKSQVYHSFNSYGKG 460

Query: 287 LST*SLIFLANRGKYMVW 234
           LS  +L++L  +GK   W
Sbjct: 461 LSRGALMWLTKQGKQETW 478


>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 419 LTPLDTDINSVLESNIELDEEFKENYELWL-EQEVYNNEINW 297
           L  +  D N  LE+   L+    + Y+LWL  QE  +  +NW
Sbjct: 282 LLKMQKDKNEGLETTFTLENLAVDMYDLWLGGQETTSTTLNW 323


>U97009-4|AAC69035.1|  336|Caenorhabditis elegans Seven tm receptor
           protein 32 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 545 NHHLIYDELLNILRLLFSCWFFATVF--LNILFAFLVISVHKTASRHVLLLMFFS 703
           N +LIY  +    R+  S  +   +F  + I+F F+  S+H     H   LMFFS
Sbjct: 25  NLYLIYLTIAKTKRIAGSYKYMIIMFSTIGIVFCFMKASLHPYLHSHNSGLMFFS 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,378,362
Number of Sequences: 27780
Number of extensions: 375925
Number of successful extensions: 1091
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)