Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j06
(848 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 28 0.12
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 2.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.7
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.2
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 6.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.2
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 8.2
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 27.9 bits (59), Expect = 0.12
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -1
Query: 773 LNKLTKWKNARIMMLVVFKSAPILKRTLKVRHALMQFYVLKLLKMQ 636
LNKLT + + I+ F ++K+ +KV+H+ Y+ ++L+ +
Sbjct: 420 LNKLTSYVISGIVKCTDFVDKAMVKQYVKVKHSATLGYISRVLEKE 465
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 670 IKACLTFNVLFKIGALLNTTSIMILAFFH 756
+ +C+ F VLF + + L T + + +FH
Sbjct: 13 VSSCVIFGVLFVLFSFLRTRTKLQPTYFH 41
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 670 IKACLTFNVLFKIGALLNTTSIMILAFFH 756
+ +C+ F VLF + + L T + + +FH
Sbjct: 13 VSSCVIFGVLFVLFSFLRTRTKLQPTYFH 41
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 2.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 338 LWLEQEVYNNEINWD 294
LW+EQ Y+ ++ WD
Sbjct: 75 LWVEQSWYDYKLKWD 89
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +2
Query: 566 ELLNILRLLFSCWFFATVFLNILFAFLVISVHKTASRHVL 685
+ + +L F+C F +L ++I H+T R+V+
Sbjct: 252 DAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +2
Query: 566 ELLNILRLLFSCWFFATVFLNILFAFLVISVHKTASRHVL 685
+ + +L F+C F +L ++I H+T R+V+
Sbjct: 252 DAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +2
Query: 566 ELLNILRLLFSCWFFATVFLNILFAFLVISVHKTASRHVL 685
+ + +L F+C F +L ++I H+T R+V+
Sbjct: 252 DAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 6.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -1
Query: 338 LWLEQEVYNNEINWD 294
LW+EQ Y+ ++ W+
Sbjct: 79 LWVEQSWYDYKLRWE 93
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 6.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -1
Query: 338 LWLEQEVYNNEINWD 294
LW+EQ Y+ ++ W+
Sbjct: 79 LWVEQSWYDYKLRWE 93
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.2 bits (45), Expect = 6.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 539 MPNHHLIYDELLNILRLLFSCWFFATVFLNILFAFLVI 652
+P H L+Y E L L + + FL +L LVI
Sbjct: 33 IPEHWLVYPEPNPSLHYLLALLYILFTFLALLGNGLVI 70
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 593 FSCWFFATVFLNILFAFLVISVHKTASRHVL 685
F+C F +L ++I H+T R+V+
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 593 FSCWFFATVFLNILFAFLVISVHKTASRHVL 685
F+C F +L ++I H+T R+V+
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 593 FSCWFFATVFLNILFAFLVISVHKTASRHVL 685
F+C F +L ++I H+T R+V+
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.8 bits (44), Expect = 8.2
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +2
Query: 500 FESPRVLHLHHFQMPNHHL-IYDE----LLNILRLLFSC 601
F++ + + H +PNH+L +Y + ++ L L+ SC
Sbjct: 94 FKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSC 132
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,787
Number of Sequences: 438
Number of extensions: 4744
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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